Gene
RNA
| Item | Value |
|---|---|
| gene id | G60430 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 15292447 ~ 15292685 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU68783 | True | 239 | lncRNA | 0.36 | 1 | 15292447 | 15292685 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_15229965_15235247 | NA | coding | downstream | 56919 | 15229657 ~ 15235528 (-) |
| CI01000009_14974529_14974816 | NA | coding | downstream | 317027 | 14974042 ~ 14975420 (-) |
| CI01000009_14961220_14973307 | NA | coding | downstream | 319042 | 14960980 ~ 14973405 (-) |
| CI01000009_14905408_14907785 | NA | coding | downstream | 384370 | 14904489 ~ 14908077 (-) |
| CI01000009_14776978_14779978 | CX43.4 | coding | downstream | 510494 | 14776859 ~ 14781953 (-) |
| CI01000009_15301177_15304489 | NA | coding | upstream | 8412 | 15301097 ~ 15304500 (-) |
| CI01000009_15318811_15390382 | TNS1 | coding | upstream | 26126 | 15318811 ~ 15390382 (-) |
| CI01000009_15483720_15484321 | NA | coding | upstream | 191024 | 15483709 ~ 15484321 (-) |
| CI01000009_15504401_15585060 | NA | coding | upstream | 211661 | 15503406 ~ 15585829 (-) |
| CI01000009_15654061_15662554 | ARPC2 | coding | upstream | 361075 | 15653760 ~ 15663026 (-) |
| G60426 | NA | non-coding | downstream | 4053 | 15288178 ~ 15288394 (-) |
| G60422 | NA | non-coding | downstream | 7467 | 15284744 ~ 15284980 (-) |
| G60418 | NA | non-coding | downstream | 17335 | 15274789 ~ 15275112 (-) |
| G60384 | NA | non-coding | downstream | 75167 | 15217079 ~ 15217280 (-) |
| G59996 | NA | non-coding | downstream | 106963 | 15185264 ~ 15185484 (-) |
| G60370 | NA | non-coding | upstream | 18846 | 15311531 ~ 15320285 (-) |
| G60437 | NA | non-coding | upstream | 255476 | 15548161 ~ 15548460 (-) |
| G60439 | NA | non-coding | upstream | 256897 | 15549582 ~ 15549879 (-) |
| G60442 | NA | non-coding | upstream | 296972 | 15589657 ~ 15649377 (-) |
| G59941 | NA | other | downstream | 159944 | 15132104 ~ 15132503 (-) |
| G59811 | NA | other | downstream | 404983 | 14862397 ~ 14887464 (-) |
| G59490 | NA | other | downstream | 1254574 | 14033564 ~ 14037873 (-) |
| CI01000009_13975122_13976026 | NA | other | downstream | 1313833 | 13975099 ~ 13978614 (-) |
| G59097 | NA | other | downstream | 3002929 | 12288217 ~ 12289518 (-) |
