LOC107197707 (c25h14orf132,LOC108413331,LOC107549545,LOC107582175)


Basic Information

Item Value
gene id LOC107197707
gene name c25h14orf132,LOC108413331,LOC107549545,LOC107582175
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52670111 ~ 52717067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606803.2
tctgagAGTGTCTGGGTGGTGATGGCAGTGTGCTGGTCGCTATGAGCTGAGCTGTGGATGGTCTGCTCTCTGGTTTCTGAGGTGATCTTCTCTATCTTCTCTCGGCGTCTCTCCTGCACCTCGTGCGCGCGCTCACAGCCCAGCGCCATGGATCTGTCATTCATGGCCGCGCAGatcCCGGTCATGACGGGGGCCTTCATGGACTCGTCCCCCAATGACGACTACAGCACCGACCACTCACTCTTCAACTCCTCTGCCAGTGTCCACACAGCTGCGATGGCAGCCCACCACCAGCAGGAGGAGCAGCAGTCCATGTCCCGCGATGCCATCTGGCTGTGGATCGCAATCACCGCCACCATCGGCAACATCGTGGTGGTGGGCGTGGTCTACGCCTTCACTTTCTGAACTGGACAAACTCAAACTGGACAGAAACCTGAGAGACCAGATCCAAACTGAAGGCCAAAACTGAGCCGAAATTCTAGAACAGGGTGGTGAGGTCTTTCGCGTAGCATACGTAGATGTAAcgtttattttctttctcccttACGATTTTTACACAAATCAATGTGAAGGTTTTTAGAGTATTTTTGATGCATCGCTCCTTCTGTTTGCTTCCTGTAAGCTGATGAATTACGAACAGCATGGTGTAGCAGAAACGAAAGAATAATAAGCCACGTTTGGTACTTATGaacattttgtatatatttttgcctCTAGTTTCAATGTATGgagtttttaaagctttaaatgtaTAGAGATCATCTATTTGAGATGTCAATCGACTGCAAAAATCCCTGATATTTCAAATGGATATGAGACCAATAATTATGGTTTAATAATGCCAGTTTCCTCACTTTCCactaaaaaattacttttaagtGTACAGTCTGCCAGTTTTTCTACTTGATAGaccttaaaacatatttatttctaattctaTCCTATTTCTTCTCAATTTGGAAGGTCAATTAATCAATCCCTGTTTATATGAACTCCCCTTATCATTAGGCAATGCTTCAAatactaggagggtgaagacttgcACTCTTTTTAAACATCACTGGGTAGCCAGCGCACTTAGAGGAAAGCATGGTTCCCCAGCTCCGATagatcagctaacagatgcccgTGCTGACCACCATCAaactactcacccagagagagcaaggtctgttgtgctctctcggattctggctgctgatgacaagcagcatgatctggtATTCACACCAGCAATCCAGGGATCACAGTGACAGCGCCTTAATCCGCTGTACCACTCTGAGCCCTAGTTGAGCATTCTTAATCATTCATCAATTGGGCCATCTCTGTTATTTGCACATTAACTTGTCCACCCTCTATGCTATCCCCTTGGTGGTTCTGCCTCTTTAACACACGCTACAATCATGCCCCTCGCACCACAGAGACAATCGATCGGCTGAACTCTCAGCACGCACAGAACATCGCGTTTTCCCCTCACGTCCACCATTCCTCAcgtttgtttaatttcagtaCTTTGCGCTTGTTTTTTGATTCATTGCCCCGCGTCCCGATCGGCAGGGTGCCGCTTTGTTCCTGTCAGCGTCGGTGCCGTCTGCCAGCGAGACAATAAGCCTCGCTTTTAATGAGTTCTGGGGAGAGGCGCGGGTTGCCATGGCAACTCGGGGTGCCTTGCCTTGGACAAAGTGGAGGAGAGCTCCCGTTCTGGTGACACATAAGTACACAcctgctccacacacacaaacacacgcacacatatgaCCTTTCCAAAGACCTCCAAGAACTTGCACTAGGAAAAGCATCTGCAGAAACCAGACAAAGGATTGGACCCACTCCTGTCCTGACTAAACATGTGTTTTTAAAGGCTTATGCTTAAAGCATCTTTCCGTTCCATCAAACATATGTACAGTACCCTAATTCATAATGACTGGAAAGGAAAATTGACTTGTTTTGGGATCCTTTGGATAGTCGCCAAGGTAGTACTGGGAGTTTATAAGATGCTAGACTGAAGCGAGGAGGAGCTTTTAGGACTGGTCTACCTGACaaactttgtttgttttaaatgtcctaTAAAGCATTTAAGCATAAGCCTTTAGGTCAACAtgcatttaaccctttcagacactgcatccattacaatggacagcaTAACACTATTcaagagctgttgtccatcagaata

Function

NR:

description
PREDICTED: uncharacterized protein C14orf132 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606803.2 True 2179 mRNA 0.46 2 52670111 52717067

Neighbor

gene id symbol gene type direction distance location
LOC103041285 LOC108413330 coding downstream 28527 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 115839 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 179224 52484734 ~ 52490887 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding downstream 213964 52451303 ~ 52456147 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding downstream 224304 52438457 ~ 52445807 (-)
glrx5 glrx5,LOC106571612 coding upstream 42986 52760053 ~ 52765844 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding upstream 616898 53333965 ~ 53410069 (-)
med23 med23 coding upstream 972300 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 1446035 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 1750950 54468017 ~ 54524305 (-)
G27755 NA non-coding downstream 190573 52479262 ~ 52479538 (-)
G27738 NA non-coding downstream 268915 52365841 ~ 52401196 (-)
G27690 NA non-coding downstream 361344 52308348 ~ 52308767 (-)
G27689 NA non-coding downstream 366134 52303601 ~ 52303977 (-)
G27660 NA non-coding downstream 486895 52181616 ~ 52183216 (-)
G27798 NA non-coding upstream 3594 52720661 ~ 52779893 (-)
G27808 NA non-coding upstream 64958 52782025 ~ 52782480 (-)
G27822 NA non-coding upstream 80498 52797565 ~ 52816766 (-)
G27836 NA non-coding upstream 187710 52904777 ~ 52905476 (-)
LOC111188804 NA non-coding upstream 221341 52938408 ~ 52942055 (-)
LOC103040973 NA other downstream 348191 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 1929677 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2130439 50522899 ~ 50539672 (-)
G27400 NA other downstream 2138472 50481889 ~ 50531639 (-)
G27258 NA other downstream 3030667 49638759 ~ 49639444 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 69405 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 905004 53622071 ~ 53622358 (-)
akap7 NA other upstream 1025813 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1332728 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1839821 54556888 ~ 54623840 (-)

Expression


Co-expression Network