LOC107197813


Basic Information

Item Value
gene id LOC107197813
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59700034 ~ 59704083 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607686.2
tgtgtgtgtgtggttttgaaTTCATTTGGTAGAAGAGGAGCTGCAGGATGAGTGttgtgctgaagctgctgctgttgggtTCTGTGGTGGTTCTGCAGGGTTCTACTCAACAATGGAACAACTACGCAGATTTGCCTGAAGAATACAGAACACACATTGACAAGGCTCTGGATGAAGCCAATAAAAAATTGGGAGGTCCTTTTCATATTGGGTATGAATCTCTTCGGACCTCACCGACCATTACACCCACAGACTGGCAAGTACATGTTCGTCTGATGGTCACTGAATGCAAAAAGGACCGTACTAAACGTCATAGAGACGAATGTGCTCAACGGAAGCCTAACACGCCCTGGATCGACTGCTTGGTGTGTAAGAAGAAAGGTGAGGAAGAATTGATTGACTGTGCAAAACTGGCGGATGTCAAGAATagaAAAGACATTCGAGAGCAGTGTCTGTACCGCCGCGGGGGAGGATCTCTGTTAGCCCAGAAAAGTGGGAATAATGAAACGACATTTGGATGTATTGGGTGTgtctgacttaaaaaaaaacacaaattctgacagaggattttaattccaataaacaacaaacttataagtgtggggttgaaatgtgtttaaaaactgcacAAACTCATTATTATACTGAGATTATatcctctttctttcccttcctGTACCCGGTTCAATAGTAGGCCAGTTTATATGTATTGGTTATGCTGGTTGGTCACGCTGAAGTGAATCCGGATGAAATTAAAGGTGTTTAACACAACACT

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607686.2 True 775 mRNA 0.43 4 59700034 59704083

Neighbor

gene id symbol gene type direction distance location
LOC103030505 LOC103030505,LOC108434978 coding downstream 91043 59599420 ~ 59608991 (-)
eif2b4 eif2b4 coding downstream 126423 59562829 ~ 59573611 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding downstream 213291 59445511 ~ 59486743 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 265721 59358827 ~ 59434313 (-)
ccm2 ccm2 coding downstream 703272 58976662 ~ 58996762 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 88493 59792576 ~ 59830891 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 178057 59882140 ~ 60059600 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding upstream 393405 60097488 ~ 60123478 (-)
LOC103033561 NA coding upstream 423964 60128047 ~ 60145920 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 459257 60163340 ~ 60177354 (-)
G29509 NA non-coding downstream 92188 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 121639 59576238 ~ 59578395 (-)
G29494 NA non-coding downstream 125498 59574328 ~ 59574536 (-)
G29492 NA non-coding downstream 140370 59554331 ~ 59559664 (-)
G29480 NA non-coding downstream 257032 59442779 ~ 59443002 (-)
G29559 NA non-coding upstream 147972 59852055 ~ 59852468 (-)
G29563 NA non-coding upstream 153983 59858066 ~ 59858339 (-)
G29608 NA non-coding upstream 369989 60074072 ~ 60091759 (-)
G29681 NA non-coding upstream 679920 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 683897 60387980 ~ 60388361 (-)
snx17 snx17 other downstream 147124 59506926 ~ 59552910 (-)
G29478 NA other downstream 261736 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 614148 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 765245 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1525330 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 445314 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 647189 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 664963 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1588793 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 2127758 61831841 ~ 61890729 (-)

Expression


Co-expression Network