LOC103046101 (LOC108414576,LOC108416204)


Basic Information

Item Value
gene id LOC103046101
gene name LOC108414576,LOC108416204
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62888868 ~ 62907516 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607799.2
AGAGCACAGAGGCCCCACCACTAGGTGCTTTTAGCATCTCCTCCACCCCAGACTTACAGACACACAAGCCTTTCTCATCAGCCAAAAGAGGAAGGGTACAGTCAGAAGCAGAGACTGGGGAGAGGTGTTGAACATGACTTATCTCTGGTTTGGACGACTGTGTCTACTCCTGATATTGTACACGACTGTGGCATCCAAAACTTTAGATGGTTCCAGGCGAAAGAAACGCGAGTGGATTCTCCCACCAACAAAACTAGCAGAGAATGTGGACTACACCAAGAAACCCTTTGTTGCCAAAATCCGATCTGATAAACATTTAGAGACCACCCCGGTGGAGTACAGCCTGACAGGACATGGTGCTGACAAGGAGCCATTTAACCTTTTTGTTGTCAACCCAAAAAATGGCTTTGTGAGGATCACAGGCATACTGGACAGAGAAGAAATATCACAGTACAAtCTGACTGGGATAGCTCGGTACAGGGATGGTAGTTTGGCTGAGTCAGACATAAAGCTGAAAATACAGGTGGAAGATCAGAATGATAATCCACCAAATTTTAGGTTATTTAAGGGCACCGTAAAAGAATGCAGCAAAATAGGAACTCCTGTAATGCAGATAAAAGCTGATGACGCAGATGAGCCAGGAACTATCAATGCAAAAATTGCGTACAGTATAGTGAAGCAGATTCCAGAACAATCTGGTGGCATGTTCTCAATTAACAGAGACACTGGGGAAATCTATGTTAAACAGCACACTCTCGATAGAGAGACTCTCGATTCCTACACATTAATAGTGCAGGGTGTGGATATGGACGGAGCTGCAAATGGCAAAACAGGAACTGGTACTGTGCAGATTAAAGTTTCGGACATCAATGACAATGTTCCCACTCTAGAAAAAGATGAGTACTCTGGTGATATTGATGAAGGTGCAATCGATGTGGTGGTGATGAGGATCAAAGCTCTGGATAAAGACTTGGAGAACACAGATAACTGGCTGGCACATTTTGAAATTGCCAAAGGTAATGAAGACGAACTCTTCACTATAGAGACAGACCCTAAAACCAATGAGGGGATCTTAAAGCTGGTAAAGCCTGTGGATTATGAAAAGGTGAAAGTGCTGGATCTTGGTTTGGTCATTTCCAATGTAGCTCCTTTTATAAATGGAACTGCTATAGCCCTTGGTCTGAATATCGAGCTGGATGGCCCTGATGGACTGGGAGCtggggctggagctggagctggtgctggaGTAGGAGCAGGAGCAGGGGCAGGAGCTGGGGTAGGGGTTGGTGTAGGGGTAGGTGTAGGGGTAGGGGTAGGGGTTGGAGTAGGGGTTGGAGCGGGTGTGGATGCTGGAGTGGATGTAGGAGTAGATGTAGATGCAGGTGCAGATGTAGGTGTTGATGTAGGTGTTGGGGTAGACGCGGGTGCTGGCGCAGGAGTTAAGCCTGGCGTTAAACCAGGAGTAAAACCTGGTCCTAAACCAGACACTAAACCTGATACCAAGCCTGGCGTCAAACCAGGGACTAAACCAGGAACTAAACCAGGAACTAAACCAGACAAAAAGCCGTCTCCAGGAGGAAAGAGCTACCCAGTGTCAATCAGTGTAAACAACCTACCTGATGGCCCAGGATTTTCACCAACAGAAAAGGACTTTCCTGTGTCAGAGAACCCAGAAGAACTGGACATCCCCATGGTCATTGGCTCCTTCCCTGCTTTGGATGGTGATACTGGAGAACTCATGGAAAATGTCAGGTATGCCAAAGGACATGACCCAGACAATTGGCTAGCTATTGATGAAGAAACATCAGAAATCAAACTTGTGAAGATGCCAGACCGAGAGTCAAAATTCCTGGTCAATGGAACATACTTTGCGAAGATCATTTGCATGACTCAAGatgtgCCACCCAAGACAGCTACTGGGACAATAGCTCTAAAGGTGCAGGATGCAAATGACCACTGTCCAGAGTTGACCAGCACCTATCAGAGCGTCTGCTCTGATACCAAAATCATAAACGTCACTGCATTTGATGAGGATGTCGATCCAAACGGAGAGCCTTATAAATTTGTGCTGATAGAGGAGGAGACTCGtggaaaatgggaaatggttCCTGTAAACGGAACAACTGTGAGCTTCCATGCCCAGGAGTTGCTATGGCCAGGCTTTTATGAGCTGACTGTGGAGATTTATGATGTGAAGGGTCTGGGGTGTGAGGACAAACAGAAGCTTCAAGTTGAGGTGTGTACCTGTGAGAAAAGTGGCACCTGTGGATCCAGATCAGCCCAACAGCAAGGCAACGCAGGCTTAATCGGACTTCCAGCTATGGGACCCCTCATTACAGCCTTTGCTATGCTCATGATGGTTCCCATTTTCCTGCTGTTCTGCAAGTGTGGGTCAGTGGGTGAATTCACGGAGTTGCCATTCGATGCTAAAGAATATCTCATCTCGTACCACACTGAAGGCATGGGAGAGGACAAGGAGGTTCCTGTACTCAGTGCTCTGAGTAAGACTGAGCAGAGTCCTATGCTGCTGAGTGGTAATGCTCCCAGTATGATCCAAATGTTGTCCGGGACCCAGGCCTGTGACAGTGCAATGTTCAGTCAGGAATTTTATGGAGGGATTATGGAGATTGACACCATGTCTGGATATCAGCACAACACCTTCTCGGCCGAGCAATATGGAGGAGGCACTATGTACACTTCATCATTCAGGCACAAGACTCATGATATTTATGAAGGGATATCACTGCCAGATTATTATCTTCATGAATACTTTTCTCAGAAAGCAAGATTTTCTGCTGAGAATCCCACTTTCATGGACAGTCTTCTGGTGTACGACTTTGAAGGTCAAGGATCTGCAGCCGGCTCCGTGGGCTGCTGCAGTCTTCTTGAGTCAGGCGATGACTTGGAGTTCCTAAATGATTTGGGAGTAAAGTTTATGACTTTAGCCGAGGTTTGCAGTCCTCCAAAACCGACTCCACCCACCCAGAAGATTGAGAAAATTGTCAAATCAGTGGATACTACCATCAGAAGTGAGGTCTGTCAGAGTTCTGTCACCACCACCAACAGAGTTCAGGTTACAGAATctgctcctgctcctcctccaccacaacctccacctccaccaccaccacagcagAGCATGGTGACCAACGTTACAGAGACCATCAACCAATCAAGTGAGATTTCCAGGATGAATACTAGTCAGACACTGCTTTTGCAGCAGCAGCCTATGTACTATTTGGTGGAGCATCAGGTACCAAGCGCTATGATTCTTGCTGAGACATCTGCGCATGGTACGTATTTGTTAAATGGAGCAGCAGGGGCTGACGGGCTGATTCTTCAGGGTGGAAACATAACACAAGACGCTCTACAACAACAAGGAATGTACCTGATTGATGGAGCATCAATGTTGCAAGGAAATATCATGTTAGGCAGTTGTTCAAATCTTTCAAATGTAGGTGGCTTGACTTTTCCCACTATGTTAGTCCAGGGAAATGGAGCCAAGAAGCCACTTCAGGGTTCTCTGGGCTCTAAAGGCCCTCTATCAAAGGAATCAGAAAATGTCACTGGTGAAGGGTCAGGGTAAAGTATTAAATGCTCAGCCTTCAGTGATTCAGGTTCAAACACTGAATTGATATGTCATTTTTACAAAAGAAATTATACGAAAAAGAAGTAAGAAATGCCAAGAAGAGCATGTTTGAAGCAGCCTGGTTTCACTGACAAAGCAAGATATATGCTCTCTGGGAATTTATGCTGATTAGTGAAACACAGCTGTGTGTGGTTATAATAccaatacattatattacattacatttggcagatgctttcaTCTAAGGCGACTTATGTACATTAACAATtatgtacatttagcaatagaggacattttaggcagggcctaaaggaggccaaaagGAAaaagtgggatagaggagtgaaggagaggaagaaggaaacgaggttagaagtagttagtttgttagaggtgttcggagagtaagtgctctttgaagagctctgtcaacgttatttttaaataattatcattATGATTGGTAAAGCTCTGTCTGTTGTGAGGAAGCTTTTAGAAATCAAGACAACTTGAtggcatttttctttctttcttttttcatttttttttacaataatagaTACAATGATTGTGTGCTTTTCTAGATTTTCTAGGACATTGTTTTAACTGAGAGGAAgaaagtactgtatataagctTTTTTGCAGAGTGCATTTGGTGGAAGTTTGCAGAGTGCAATATCTTTGGAAAAAATATTAGGTTTATTGGgactttttaatggtttttttataaaactggTTTGGAACTGGAAGCATGTATGATGGTCTGTCTTGACTGGTCCACCACTCACTTTGTTTTCATGATGAAATGGGGGACTCTGGTGAATGAAACATGGTTCATTATTCAATCACATACTGCAACAGTTTGAACACAATGTTTGTGCTCCACTGTGttcataaaaaagaaagtacTGTGTATTAAGTACTACCATTTTTTTGCAACAGATATGTGTGAGATGAACAATCCCAGTGTTATACCCTTTAATGATTAGAATTAAAAATGCCTTGATAACTACCAAAGTATTAATCACTGTCACAGAGATCATTAAGTATAGGAGTGATATGAGGAAGTTTAGGTGATGCTATAGCTGACACAAAAACAGATTAAGaaagttaatattaattaataatactaTGATGCAAATGAAGAGAAAGTGGAGAAAATCTGCAGATGCCAGAGAGACTTTTTTatcagtaatttaaaaaaaaagctaatgcaGACCATTACATAGCTATATATACATAGCTacatatacattaatatatgtataatgtatattgtttgAATATAAATGGTTGCAAATCTCACTGTCTGAGACCCGATTCACTGTCTCACTGCCTTTTGATGACTCATCATTGTGGGACAGCACCTAAGGGAGATTGTATAAACAGAGCAGAGTAGTGAGGTCTATTGCTAGATGAACCAGTAAACACAGGGTCTATGTTATTTTTACTGGGATtttaaaaacctgaaaaatatgttatttttgcctttttattaAATGGTAATGGctgacatacatttttttattttatccaacTGTACCTATATATGATACTACATCAATATTGCTTATATGCAATGCAAACAGCCTTGTGTACAGGcatactactattattacatttattagcaATCAGTGGCAAGTGCAATCATACACagcctggcaaaaaaaaaggtcacacactctaatatttagttGAACCACCttaagctttgattgcagctcacattcgctgtggcattgttttaataagcctCTGCAATTTCAGaggatttatttcaatccagcaTTAATTATCACCatgatcttgcagcattgatgatgttaGAGTCTGACCATTGCGCAAAGTCTTCTCCAGTACATCTCAAAGATCTCAaaggtgaacaatccatgtgtgaaaatgatgatctcatgctccctgattcactctttcacaattccagccccataaatcctgacattatcttggaatattcccgtgtcatcagggaagaaaaaatccactgATGCagtaacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcactgacctcattctttcagcagaaACCCCAGATCATAGCTCCGCCCCCACAGGCTTGTACTTTAGACACTAGACATGATGGGTGCATCACTTTAGCTGCTTATTTGATATGTGGTTTTCtccaggctacacagctgtttttAGTCCCAATCTCTTGAGATCCCTTTGCATATGTGTGtttggaaatgctcttactttcactattaaacatatccctgAGTTCTAGTGTTGTTTTACTATGATTTGATTTCAACAAAGGTTTAAGTGATCACCAATCAccatcatttagtttttttcaccACATTTCTTTTCTCAAAGATGATGTTTCCGCACTGTCCttccattttttaataaagcattGGATATTTCTCAACCCAATTTTAGTAGTGTCAGTAGTTTCTCCttattatgatgtttttttctgctgagTGCATGCTAATTGACCGTTTTTCCACATagttatttaacaaataaatagctactcactgcatcagttagggttaaattaATTGTTGCCAGCTAAAACCTAAACACCCATGCAGTAATAAGCCAACATATTTGCTTAGTTAATACCAAAtggtgacctttttttggccaggcagtgtacctTGATGATACATATTACacaattttaaactttaaaatggctCAATATGGCATTTTTGTCTTTACGTTTCATGTTTAGGTTTATTTTTTGTAGAAATGGTGTGCGTTTTTATATGTAGATTGGCTTTCTTGAGGATTATTTTTGTTAatggtttcatttttttatcttggatAAAAGTCCTGATCTAAGCATCCTTGTTTGATATGTTTTGAATGTGTGATTTTCCTTTTTATCAAAGACTAAATGTGCCATGTCAGCGTTTGCTTGCTTTTCATTAAAGCCTGTCCTTTCCTGCTGTATTTTCACCAGTGAATTGCCCTGTCAGCTGGGTTCTTCTAGTTCACTGCTGATGGCAGTGTTTGTCTGGCATGCTCACAGACATTAATGTGTTAGGCATACTGACACATTCCTGGCCTGTTCATTTCTGGAAACGCTGCTGCAGCCCTAGGTGTCCTGGAAGTAACTGCCAATATTTCTTTTGTGCCTCTGTATGTATAAGCTTATCATCACAACATGCAACTGATGTGATTTTTGTTATCATTGTTCTTGAAGGCGTTCATGCCTCATACCTtcagtttttgttgtttttgcatttgtttatCATATATTTCAACTTGTGTGAACATTTAATGACAAGTGAACAAATAAAAAGTCTGTAATCTTA

Function

NR:

description
PREDICTED: desmoglein-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607799.2 True 6925 mRNA 0.41 14 62888868 62907516

Neighbor

gene id symbol gene type direction distance location
LOC103034413 NA coding upstream 3570 62869111 ~ 62885298 (+)
LOC103033766 LOC103033766,LOC108416260 coding upstream 95280 62791748 ~ 62793588 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding upstream 898204 61984639 ~ 61990664 (+)
LOC103031223 NA coding upstream 905409 61950471 ~ 61983459 (+)
l3hypdh l3hypdh,LOC107684001 coding upstream 1184040 61693955 ~ 61704828 (+)
LOC103046397 NA coding downstream 1575 62909091 ~ 62925805 (+)
ttr ttr coding downstream 28169 62935685 ~ 62940874 (+)
anapc4 anapc4,LOC107665412,LOC107683992 coding downstream 159004 63066520 ~ 63086982 (+)
slain2 slain2 coding downstream 180464 63087980 ~ 63111659 (+)
slc10a4 slc10a4 coding downstream 215790 63123306 ~ 63131100 (+)
G30168 NA non-coding upstream 84114 62803591 ~ 62804754 (+)
G30138 NA non-coding upstream 149956 62737567 ~ 62738912 (+)
G30130 NA non-coding upstream 236931 62649364 ~ 62651937 (+)
G30125 NA non-coding upstream 300812 62587723 ~ 62588056 (+)
G30122 NA non-coding upstream 326788 62561878 ~ 62562080 (+)
G30280 NA non-coding downstream 209346 63116862 ~ 63117415 (+)
G30311 NA non-coding downstream 231782 63139298 ~ 63142668 (+)
G30314 NA non-coding downstream 242150 63149666 ~ 63150215 (+)
G30335 NA non-coding downstream 356434 63263950 ~ 63288134 (+)
LOC111191941 NA non-coding downstream 390347 63297863 ~ 63298732 (+)
LOC103045797 NA other upstream 35580 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 952785 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2363817 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 3290536 59586709 ~ 59598332 (+)
atraid atraid other upstream 3329106 59554285 ~ 59559762 (+)
LOC103035278 NA other downstream 18502 62926018 ~ 62931133 (+)
G30362 NA other downstream 428218 63335734 ~ 63345693 (+)
kit kit other downstream 1323728 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 2114903 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 2170264 65077780 ~ 65086780 (+)

Expression


Co-expression Network