LOC103036923 (cdca4,LOC108411322,LOC102794764)


Basic Information

Item Value
gene id LOC103036923
gene name cdca4,LOC108411322,LOC102794764
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58227206 ~ 58234274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608114.2
TTTGGGGTTCCCCAGATGAAGAAGCCctggcctgctgctgctgctgccggctGTCTATCAAACCTCAGCGTccgccccctcctcctcctcctcgcccCTCCACCGGCGCAGCTGGCCGCCTGGCTGCAGACCCAGCGCTCTGAACTCGCTCACTGCAATCTGGCTCCCAGCGGCCGCGGAGCTGCACCTTTAACACCGCCGGGCCTCCAGCACGCTTATGTCGCTCCCCGCCGCACAGCGCCAATAACACCAGTGCTGGGATGTCACTCATGCAGCAGGATCGACATGTTCTCCAAAGGCACCAAGCGCAAGTTTTCCGACGATGGCGATGAGATGTTGGACGAAAGCCTGGCCGGTGCCCAGGTGTCATCATCCTATAGTCTGCAGCGACAGTCACTTCTAGACATGTCCCTTATCAAGTTGCAGCTGTGCCACATGCTGGTGGAGCCCAACCTCTGCCGGTCGGTCCTCATCGCAAACACGGTGCGGCAGATTCAGGAGGAGATGACCCACGATGGCAGCTGGCAGGTGGTAACGGAGGCCTTCTGTGGTGGTAGCCAAAGCCCTTCTGAGCGCCTGGTGGCCACCGAGGTGCTGTGCCGGTCACGGGAGCAGGATGCAGAGCCAAAACTCTTCTCTGTCCTCAGCTACGAAGGGTGTCGTGAAGAGGAGGTGGTGGCAGACGAAACATTGTGTTCAGTTTCGGTCAGTGACACCGCCTCCAATGTTTGTCTGTCAGAGAGTGCGAGGCACTGCTGGGAAAGGGATGAGCTGGTAGACGCAGACAGGGATGATGAGACCTGCGAAAGCTCTAGGCTTGGCCCAGGAGATGATGAAGATGACGATGATGAGGACGACGATGACGAAGATGAAGAGGTAGATATAGATGAGGAAAGTCCTAGGGACAATCCAAAGACCATGGGGCAGGTTTTTGGGACCTTTGAGATCAAGAACGGTACGCCAGGTCCAGACTCTGCTCTTGAAGAGCTCTTCTCAGACGTGGATGCCTCCTACTACGACCTTGACACCATGCTCACGGGTATTCAGAGCGCTCCTAAGATGGGTCCCTATGACCTGCTGGACAGTTTGGCCCCATCCCATGGGCCCCCATCCATAGGCTCCCCCTCAAGCTGTCGATCTGATCTCAATGAACTGGACCACATCATGGAGATCATTGTTGGTTCATAGACCAAAATCTGTCCAGAGACTTGTATACTTCTCTTAAATAATACCTGCTTTTCTGCCCCTTATGGAAAGCAAGTTTAATCTGCGGTCCTTTCAGGGAAAGGAGTCTGTGTCTTGTAAAGGATGGCCTTGATTTTATGAGCTGACCATAGTTATCTTATTTGCATAccctttgtatgtttttttttatgttttctttctgtatttgtCTGTCCAgacatgctgttttttatttatttcatacatTCATTAACACTACATGGTTGGAGAGCAGAACAAGGcttatacaaaaatgtaaaagatatTTTCATATAGAACTGAAATTgtctaaaatatgtatataaatttctatatattttttacgaTAGATACTGCTTGTTAACTGTTACTGTACTCTATCGGTTTCATAAATTGGCAGATCAGAtatggtttttttttgtggtcttCCACTTACTGAAATGGTTGAAGGTGAAGGacttttattcatttcaggATTCAGAAATGGCAGTAAGGATACAGTGATGCATGACTTTCTGTTGTACTTTAAGGTGCATTTTTGGCACCCAGCATTCCCCTTCCCTCCCCTCAGTATTTCAGCAATAGGCTGTCGGTCAGCTCAGATGCAGCTCGTTTTGCTATTAGAAGTCAAAGTATTCTTATATTTGTCTTATCAACAAATCAAGAATAATGGGGGCCAGCCCATTATATATAATGACttttaatttattctatttatttgctGCAAACTTACGTGTTGAGTGTTGGCTTTGGTCAAACTCAGGGCAGGAGAGATTTTTCAACTCTTATCAGACTCCACGAGCCTGATTCACCCAGACATTTGGGGTATGAGTATCATGGCTTTTAATTGGCCAGTTTATCTGGCATGCACTAGTCATTTGTTTAATTGCCGGTTAACCTTTGACATCTTCAGAAGGCtttaataaatcttgtaacGTGGGCTGTGTTAAGACATtcatttttcgtttttttttttttgtttttttgtttttttacaattttgtaaGACATTAATTTGATGCACATCTGATCCTTAGCGATTACAAAATAACGGCATGAAATTTCATTCAGTCAAAGCTTGTCACTTTCCAGTAGTGTGTCTTTTGCACACACATCTGCTCCAAACTGTTTTGATGTCTGAGGTGCAACCTGCTGTCTAAACACAGCCTTTCTGGTCCCTCATAATGAACTATACTGTTTCTATGATCCTATGCATTGAGTGTAGCAATACACTTCCTATGCACAAAGTGTTGGAGCACACTTTCAAGTACAGTGTTTTCATGTGTATTTTCAACGAAGTTAAAGAGGACAAGGGTTAACTGTTGTCTTCCTGTTACAGAAATCATTCAGTCATGTCTGAAAGGAGTTATTGcgttctgaaatgtttttttgtgcaagCAGTACAATAATTTTGAGGGGAAGTTGCTGCCCTCTACATTACATCagtttcatttttaagtatGATCTAAATCTAGAGTAGatgataaacattttatatgtgcattgtagcatttttataacatttttaataaaaggtACAACTTTAAA

Function

symbol description
cdca4 Predicted to be involved in chromatin-mediated maintenance of transcription. Predicted to be active in nucleus. Orthologous to human CDCA4 (cell division cycle associated 4).

NR:

description
PREDICTED: cell division cycle-associated protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608114.2 True 2751 mRNA 0.45 4 58227206 58234274

Neighbor

gene id symbol gene type direction distance location
LOC103037877 LOC108411323 coding downstream 4261 58210877 ~ 58222945 (-)
LOC103038188 LOC108411316 coding downstream 29006 58192628 ~ 58198200 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 37477 58175809 ~ 58189729 (-)
chga chga coding downstream 77459 58136609 ~ 58149747 (-)
tmem251 tmem251 coding downstream 143723 58081670 ~ 58083483 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding upstream 32406 58266680 ~ 58274282 (-)
LOC103034096 foxc1 coding upstream 157847 58392121 ~ 58394358 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 173162 58407436 ~ 58410581 (-)
LOC103033450 foxq1 coding upstream 183107 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 251334 58485608 ~ 58495458 (-)
G29108 NA non-coding downstream 102641 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 169746 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 233093 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 350461 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 373448 57849734 ~ 57853758 (-)
LOC103035795 NA non-coding upstream 28970 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 78540 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 180890 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 286363 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 435020 58669294 ~ 58705165 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 52502 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 231730 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 385888 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1532371 56640351 ~ 56694835 (-)
G28536 NA other downstream 2410608 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 698689 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 764267 58998541 ~ 59085886 (-)
G29478 NA other upstream 1203326 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1272652 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1915123 60149397 ~ 60162066 (-)

Expression


Co-expression Network