LOC103032200 (LOC108415433)


Basic Information

Item Value
gene id LOC103032200
gene name LOC108415433
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65048058 ~ 65061608 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608420.2
TGCGTCTCCTGTAACGTCGTGACGTATTTGAAGGCGGGGCCAGGTTTTAAACGGCGGCTGTGCTGTAGCTATagctgtggtTGCTGCTTTTACAGACCGCAAAAATGAACTGGGATAATCAGCTCAGCTCTATTATATCAGCAGCTGATGGAAGTGTAGCTAAAATGCGGGAACGACTTACCACACATGGAAGACTTTCCAGAGAAAGAGAAGATGTGTTTCCAATGAGAGAGAGGAGTCATGCTGTGGGTCTGGAACCCGGTGTTCCCCCTCTCCTTCCCCAGGCCTCCCCCGCACTCAGTGGAGCTGTTCAGTGGGCAGACCTGGCAGGTTTGCAGGCCCAGCTCCACAGCCACAGCCAGACTATTGAATTTTTATCAAAGAGCTTGATGtctgtagagagagaaagaaatgctCAGCAAAGACAAATACAAACATTACAAGAGGAGATGAGGAGGCTTGAGGAGAAACTGGATGACCgggagaggcagagagagcgagagcgtgagagagaccgagagggagagaaggaccCCGGGGTAGAGAGGCGGCTAGAGCAATGGAAGAGAGAAGTTGGACGAGAATTGAGCAGCCTCAGAGGCCACATTGACAGGACAACGTCGCTAGGCAACCAGGAGGAAAGTTTTAGCTCTAAGCTGCGCAGGGAAGAAGTGGAACAGCTTAGAAGAGAAGTGGATCTGCTTAAAAACAAGCTGAtgaggcAAGAGGAGGATATGTACCAACAGCAGTCGGAGTCGAGAGAAACAAGGAGGCAGTATGAACGCAGCTGCAAGACATTGGAGAACCTTACAGATTCTTACCGCACACACAGTTTTGAACTGGCCAGGATGGTCTCCCAGTATCAGCACACACAGCAAGAAGTACGAGAACTCAGGCTCACAGTATCTGAACTGAAGGATGAAGTGAGAGGCCTGATTCTGAGAGACAGACTTTCCACACCTGCAGAAGTGCTGTGCAAACCAGCCCCTTCAGCATCAGCAGTTGCTGTGGAGACGAGTCCCCCGAGACGAGTGCTGTCAGATTCGGAAGACGACTTTAGCCCCACCCCTAGTCTTGGGGAGGTTAGCTCAGATGATCTGGATGGGTCCTGGCTTGGAGAATCAGCTCCCAAACTAAGAAGCGGAAGTGGAAGAGGTGCACGCTTTAGCCTCTCAGGAAGTGACCTCAGTGACGCTGGCAGTGGACTTGGAAGTGGACTTGAGAGCAACCATGACGACACAGGTGGTGAGGTGGGAGGAGGATTAGACAGTCCTCCAGACCTCAGTCTCAGTGACCTCTGACATGAGAAACGGAAATAAAGCCATGAGTTTACAGCTGATGCAAAGAAGGGAAGACAGATCTTTACTCTTACATTTTTTGTctacttttttttgtctaagTGTGTATCTGCGTTACCCAGCAGTATTTATCAAATGGAACGTGCTTTCCACTCTGTGTAATCGATCTACTCAGTGGCATATTTACGAACATCGTGAACGCACTGAGCTTTCTTTGTGCTCCGCCTCTTGGAGCTGAAAACAGGGTCCTACTGCTGCCGAGGTCAGCTAGGAGAAAATGAGCTGAGAACTAGTATttggagagagatagagtggcACCTACTCCCCAATTATGCTCTCTATCAATTAACTGTTCACTGTGCTCTTACTAAAATGAATAAAGGTGCTTTAGAGTTTGTTCCGTTCAATGGTTGTTGGCATTTCAGTggcgtttttttcccctccaGTGCAAATTAGCTTGACGTAGATTGGGCTATTTTAAACAGTTGGACAGACTGAGGGCTTTGTTCACAGGAGGTTGAGAGAGTTATAAGAAcacactctgctaaagtacccCAAGCCCATCTAAAATTCATGTTATTATAACCACCCctccctcccacacacacacttctcctaCCTCTTCAGGGGATGGCCTCCTCTCAGAAGAATATTTGAGATGATACCTGATGCAAGAGCCTTGTCACCAATCCCCCATAATTCCTATGAGATTCGTTGTatacttttctgttttttactaCTTCTCCATTTCCTCCTCTGCTTCATACTTTCTCTACAcactcttttctgttctttgtAGTATTTGTGCAAATGATGGTATGCACAACAACAGAGTGTTAAATAAGTATAGTTTCTGTAGTTTGTCTTTTGTCAGTATCTGGTTCTATATCGACTGACAGTCATGGATTGAAATTGGCTACTGTCTATAATTGTAAACTTAAAGTTCACctatttgaaaatagcaatactAATGTCCTCATTAGTACCAGTCCAGCATAGGGCTGTTactttcaataaataaaatattaaacagatcTAAATATC

Function

NR:

description
PREDICTED: RNA-binding protein 25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608420.2 True 2342 mRNA 0.46 12 65048058 65061608

Neighbor

gene id symbol gene type direction distance location
ipo13 ipo13,LOC107697216,LOC107593276,LOC107691006,LOC107745904 coding downstream 28823 64961081 ~ 65019235 (-)
pfas pfas,LOC107593806,LOC107737373,LOC107556148,LOC107665308,LOC107737297 coding downstream 91829 64935065 ~ 64956229 (-)
hook1 hook1,LOC107665311 coding downstream 132089 64892384 ~ 64915969 (-)
LOC103035690 NA coding downstream 199834 64840145 ~ 64848224 (-)
LOC103037239 NA coding downstream 285909 64752232 ~ 64762149 (-)
trnad-guc_2 NA coding upstream 10536 65072144 ~ 65072215 (-)
trnad-guc_3 NA coding upstream 11134 65072742 ~ 65072813 (-)
zyg11b zyg11b,zyg11,LOC107712854,LOC107669142,LOC107721807,LOC107658153 coding upstream 163397 65225005 ~ 65245689 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding upstream 308762 65370370 ~ 65418481 (-)
LOC103027441 NA coding upstream 521375 65582983 ~ 65586569 (-)
G30869 NA non-coding downstream 25106 65022352 ~ 65022952 (-)
G30857 NA non-coding downstream 161565 64885135 ~ 64886493 (-)
G30855 NA non-coding downstream 171388 64875838 ~ 64876670 (-)
G30830 NA non-coding downstream 223934 64811386 ~ 64824124 (-)
G30900 NA non-coding upstream 92510 65154118 ~ 65159284 (-)
G30919 NA non-coding upstream 219811 65281419 ~ 65454260 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding upstream 411529 65473137 ~ 65474665 (-)
G30980 NA non-coding upstream 530215 65591823 ~ 65592054 (-)
G30990 NA non-coding upstream 615902 65677510 ~ 65681603 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 248882 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1284385 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 1563037 63433792 ~ 63485021 (-)
G30376 NA other downstream 1713212 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 1759950 63136951 ~ 63288108 (-)
trnad-guc_7 NA other upstream 31470 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 35994 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 1800857 66862465 ~ 67044318 (-)
G31424 NA other upstream 2362264 67423872 ~ 67432424 (-)
G31437 NA other upstream 2442141 67503749 ~ 67528337 (-)

Expression


Co-expression Network