LOC103042125


Basic Information

Item Value
gene id LOC103042125
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64742654 ~ 64749709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608431.2
ctgttaatATAATTTCAGGGTGTTCAGTAAATGTCaggtgctgtaaggaactttacacacattttaaggGTCTGTGGTCTGTAACACATACTTTACTATGGACtcgtttgagttaaatgaaagttgttttgttgtttagcCCAGtagcagttttgtttactgatATAACAGCGGAAACAGGAAGTGGGATTTGGCGGCAGAATATAAGCCTGGTTGCTAGGCGACAACCCTGTTCCGGAAAGTGCCCTACTGCGCATTTCAGAGAAACCGAAAGCAAAAGTGCAGGCGGCTCTTCCTCTCAGCGAGAGCTCAGAGAGATCAGTGTGAGCTGAGTGTGAGTTGAGTGTGAGTTCAGCACGATGGCAGAGGCCAGTATTTCTTTAGATGAGGAGAACTTCAACTGTTGCCTCTGTATGCACCTGCTGAAGGACCCCGTGACCCTTCCGTGCGGACACAGCTACTGCATGGCGTGTATTAATGAATTCTGGGACAAACAAGAAACCTTCGACTGCCCCCTGTGCAGAGCGAGCTTCGAGCCCAGGCCTGACCTGCGCAGGAACAACATACTGACTGAGGTGGTCCAGAAACTGCAGCAGACACACCTGCAGGGCTCTCTCTACCAGTGCTGGGACCTCTCTTCCTCTGAAGGTCAGGATGTGGAGTGTGATTCCTGTGTTGGGGAGAAGAAGAAGGCTGTGAAGTCCTGTCTGACCTGCCTGGCTTCATTCTGTGATGACCACCTCCAGGCTCACCGCGAGTCTGCCGCCTTCAAGAAACACACACTCGTGGCAGCATTCAGGAACCTGCAGGAGACCACCTGCACCAAACACAACAAACTTCTGGAGGTCTTCTGCCGCAATGACCAGAGACTCATCTGCTCTCAGTGTCTGTTGGACAAACACAAAGGACACAACACCGTCTCTGTCCAGGAAGAGTGGGAAGAAAAGAAGAAGTGCCTTGCAGATCTACAGAGAAAATACCAGAACAGACAGGAAACGAGAGAGAAAATTCTGCTGGAGTTGAAGGAGCTTATGGAGTCTTTCAAGCACTCTACACAGGCAGCAGTGGAGGAGAGTGAGAAGATCTTTGGTGAGCTCATCCAGTCCATTGAGAAAAGGAGATCTGAGGTGACAGAGATGATCAGAGCTCGAGAAAAGGCTGAACTGTATCAAGCCAGAGGTCTCCTGGAACAACTGGAGAAGGAGATtgtagaaataaacaaaaaacacactgatctaGACAAGCTTTCCCACACAAAAGATTATGTCGAGTTGCTTCAGAAATCTCAGGTTGTGTATACCGATACTGAAACCAATGATGCTATAAAGATAGCTCTCAATAAAGAGCCACCATTTGAGAAATTCATGACATCTGTATTGGAGCTGAAAAAGCAAATGGAAAGCTTCTGTGAGGATGGACTGAAGACCATTTTTAAAAGTGTGAACTACAAGTTCATTACAGATGCTGAGCCAGAAACCAGGGAGGACTTTCTCAAATATGCCCGTGTTCTATCTCTGGATCCCAACACTGTGAATAATAACCTCCTGCTTGAAGAGTGCAACACAAAGGTGATCAGTGACGGTATGAGCCATTCATACCCTGATGATCCTGAGAGATTTACCTACTGGCAGCAGGTGCTCTGTAAGCAGAATGTGTCTCAGCGCAGTTACTGGGAGGTTGAAGTGTGTGGTGAAAATGGGGTTTCTCTTGCAGTGTCTTATAAAGCAATTCAAAGAACTGGATGTGAAAAGGATAGCAGGTTTGGGCATAATCGTGAGTCCTGGAGATTAGTTTGCTATCCTTCTAAATACCGGTTCTGGGAGAATGATAATCAGATTGAGATTTCTGGACCGGCATCCAAAAGAATTGGTATCTATCTTGATGAAAAGGCAGGGACTCTTTCGTTTTACAGTGTTACTAATAAAATGATCCTCATTCATAAAGTCAAAACCAGATTCTCTCAGCCCCTGTATCCTGGGTTTGGGATAGGTTCTGACTCTTATGCAAAGCTTTGCATTTACGCCTCAAGTAATGATACTGGTGAGATCTCCAAGAAGAAATGAGACACTGTCTTGGTTGTAATGAGTAAAGATGATTTTAAGAAATACCTTCCAGTAATATCCAGTAATGATGAATAGTTGTTTACACATAACTCAGAGTTTCTGCCCACCTCAGCAACAAAGAAAAAGGTCAAAAGATTATGTATGTAGCCTAATGCAGAATTTTACATAGAAGCATAAGCCAGTGTTTGATATTTGTCGTGTTAATTTTATTTCCTATTTACCATTTACTTACAGAGGTAGTGAAAAGGAGTAGAGGTTAAAATGTCTACAGTGTTAATATAAGCgttatattaaaaacattagaaCAAATGTGTTTGgactaggggtgtgccgtatcgtatgcgataatatactgtttttagcaaaagaaaaattcacactgttctaatttcccattgtatatctactaaagacagattatatctgtccattatcatttattttactttaatcctggatatatggagatatttggagtgcattattattattagtatcatgacaatctggacattgacttctgttacaaatctgataaaattcttttattttttaatatatcagttaggggtgtatcatatcgtatgtagtaaaaaatattttcattttgttgcagtagtgtattttttaaatatttttttgtaattcagtgtttttcgcCAAGactatcgttatcgcgaaaacaccatgaaatatcgtgatattattttagggccatatcgcccacccctagtttggACGCTAGTTTTCCAACCACTATGAATgtatttaaaagtacattttatgtCAAAAcgtaagttttttttctgttaaatgtGAAGTTGTCGCTTgctgataaaaaacaaaacatgaaggaatttattaattatttattaggaTAAATCACTAAGTTGATTCAGTCGCTTACTTTAAAATGACAGCATGAACATGTTCATCCATAGATAATATAGCCCTCTTCAGTTCAATGTAAACATCTTCTGTTTAATTTCCTCAGTATTCTGTTATGTTATTTTGAATATCTTGCAGAGTTCTCTGATATttagtgacaaaaaaaaactcctaccctgttttaaaatataacaaagtaATGTATGAAGCACGCCTTATTTGTGTAATTGCCTTTAAATTTCTGACCAAATAAAGCTTTATTAAACTGCA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608431.2 True 3221 mRNA 0.40 6 64742654 64749709

Neighbor

gene id symbol gene type direction distance location
LOC103042444 NA coding upstream 414 64731659 ~ 64742240 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding upstream 14353 64712173 ~ 64728301 (+)
LOC103038194 NA coding upstream 40114 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 69143 64629173 ~ 64673511 (+)
chst14 chst14,LOC107665414 coding upstream 140016 64591657 ~ 64602638 (+)
LOC103041822 NA coding downstream 53515 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 76986 64826695 ~ 64834077 (+)
LOC103041527 LOC103041527 coding downstream 98939 64848648 ~ 64856825 (+)
LOC103036008 LOC103036008,LOC108415307 coding downstream 109621 64859330 ~ 64868413 (+)
LOC103035382 LOC108415267 coding downstream 120142 64869851 ~ 64876715 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding upstream 23616 64709323 ~ 64719038 (+)
G30617 cep135 non-coding upstream 120316 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 128546 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 196532 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 199233 64542115 ~ 64543421 (+)
G30652 NA non-coding downstream 2524 64752233 ~ 64774978 (+)
G30653 NA non-coding downstream 3817 64753526 ~ 64755851 (+)
G30664 NA non-coding downstream 39412 64789121 ~ 64791799 (+)
G30643 NA non-coding downstream 61670 64811379 ~ 64824149 (+)
G30683 NA non-coding downstream 142689 64892398 ~ 64909454 (+)
kit kit other upstream 472959 64231244 ~ 64269695 (+)
G30362 NA other upstream 1396961 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1811521 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1889366 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2806571 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 272710 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 328071 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 348793 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 349582 65099291 ~ 65099362 (+)
G31000 NA other downstream 1079072 65828781 ~ 65837365 (+)

Expression


Co-expression Network