LOC103035599 (LOC103035599)


Basic Information

Item Value
gene id LOC103035599
gene name LOC103035599
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39704128 ~ 39705844 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608494.2
CATGATGGTTGTGAGCATATTCCAAAATGTGAGCTTAGGAAACACTTCACTTTGTTATGATCATCCTAACTCTTGTCAAAAACTGAGCTATCCACTGgcctttaaaattgtattttatttgattactgGTGTCATTATACTTCTTACATTATTTGGGAACCTTATGGTGATTGTAGCTGTTGTTCACTTCAAGCAGCTGCACACACCAACTAactacctcattctctctctggcTGTAGCTGATCTGCTTGTAGGAGGGGTGGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTATTTGGGGATAGTATTCTGTAAAATACACAGCAGTCTGGACATTACATTGTGTACTGTGTCTCTACTGAATCTTGCGTTTATCTCTGTTGATCGATACTATGCCGTGTGTCACCCTCTGCTGTACCACAATAAGATAACCCCTCTTGCTACTCTTGTTATGGTTGTGGTTTGCTGGAGTTTTTCTACAGTTCCAGCCCTGGTGATGATGTTCCCCCTGTCCACTAATGACGAAAGTGCCACCTTTTACCAGGAAGATGGAGTCTGCAAAGGACTCTGCATGATTTCTTTGACACCAGTAGCAAGCCTTTCCACTTCCCTGTTCTTGTTTTACATGCCTGCTATAGTCATGCTTTACATatatcttaaaatatatttagttgcACAAAGGCACTCACGTTTAATCCGCAATGCACAGGTTGCTCGTAAGAAAATGACAGTAAGCATCAGCAAATCTGAGAGAAAAGCTACTAAGACACTAGCAGTAGTCATGGgagtttttctgttgttttatgCACCAGTTTTCATTTACAGCATTATCATTCCAGTTTCTGGTTACACTGGCTCACCACAGTTGTTTGAAGTGCTTAGCTGGATTGGATATTCAAATTCTGCCTGTAATCCTATCATTTATGCGTTTTTTTACCGCTGGTTTAGACAGGCACTCAGAAATGTTCTACTtggtaaaatatttaatgaaaacTCTTCAAGAAGTGAATTATCCTCAGATTAGATGTACGATTTTTTTGTGCTGCTCTACTCATTAAACCTTTCCGATACATGCATATAAATGCAATGAAGTTTCAGTGATTTACACAAGCATTTAGTTTTCACCCTTTTTCACTTTTAGGATTACCAGTCACACTACAAATCAACACTACAGGGGCAGTTTTCCAGATAAAATGCCTATTGAAAGACAATTTAATCTAGACCCAGGCttaatccatgtctggtaaaacataaaactcaTAGAACAGTGCAGAGTGTAATTTGATAAAAGATTCATTAATGAGAATTCAAATAACAGAACCAGTAAGAAACTTTAGACACAGTGATTTAATCTACATCAGAATAAATATAATAGTGTTTTAGGCTAGAATTATATTCTGGTGCAGTTAGAAAGTCATATAcgacaaaaaacatatttggatTTTTAGGTAGGTACATTTCAttccacacatttacacacaaaaatgtttttgttttttttttcattacaagAATGAAAAGCAAGAAGGTAATTTTAAGCACTTGCGAAACTTTGATATAGTTGCGTTGTAACTGATCTGATAAAAAcatcttctgcttcttctcattaaaatatatatagacgTTTTCCTTTAGAAAATTTGTTCATCTGTGTGTATTCAATAAgcatcataaaataaaataaagaaatcctgCTGCTCATAAA

Function

NR:

description
trace amine-associated receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608494.2 True 1717 mRNA 0.36 1 39704128 39705844

Neighbor

gene id symbol gene type direction distance location
LOC103035296 LOC108432792 coding downstream 3422 39699292 ~ 39700706 (-)
LOC103036931 LOC103036931,LOC108432867,LOC108274078 coding downstream 10946 39691978 ~ 39693182 (-)
LOC103032818 NA coding downstream 37049 39665304 ~ 39667079 (-)
LOC103037563 LOC108432817 coding downstream 41812 39659836 ~ 39662316 (-)
LOC103037243 LOC108432794 coding downstream 46682 39656134 ~ 39657446 (-)
LOC111194344 NA coding upstream 12845 39718689 ~ 39720722 (-)
LOC111191820 NA coding upstream 21670 39727514 ~ 39728585 (-)
LOC111191823 NA coding upstream 28003 39733847 ~ 39734968 (-)
LOC103035909 NA coding upstream 44178 39750022 ~ 39751990 (-)
LOC103031565 NA coding upstream 49633 39755477 ~ 39756680 (-)
LOC111196215 NA non-coding downstream 179854 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 204662 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 223784 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 494863 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 515850 39187782 ~ 39188278 (-)
G24964 NA non-coding upstream 18611 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 113432 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 139529 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 677757 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 1019955 40725799 ~ 40726362 (-)
G24903 NA other downstream 245939 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 357212 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 379426 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 777135 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 781211 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 469418 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1508577 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1730197 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2150251 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2163180 41869024 ~ 41880424 (-)

Expression


Co-expression Network