LOC103042954


Basic Information

Item Value
gene id LOC103042954
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39356694 ~ 39361435 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608509.2
ttgaaacaacaacagacattacttcaACGTTAAAtatttcaacgttgaaggttGGTTGTGTGCAAGCTGGGAACACGTATAGGTTTCTTGCACAGACTCTTTGTCAGCCTATAAGTTCTGAAAACGCAGCTGTTAGACGTTGTTTTTCACAGTGGTTACCCGCACTGAGCAATGCAATAAAGGTACAAACAGCAGCACGCGCACAATGACGACCTAGCTTTGGTTTTAGCCACCGACGTGCGCTGAACAAAAAGCACAGCCCTGCATTTTCGGTTTTGGGGCACAGCACGTGAAGTGCTGTTCAGCAGCTCCCATTTTAACAGCTGCAGTGCACACAGTCTGAATGAAGCGGTCTGATTTACGCCCCCCCTCCCAGCCCTGTACATGGTATGGTCTCGTCTCATAGATTTCATTCATAAAAATCCTCTCTCACTATAACAGAAGAAACGccggagagagagcgagagattgCTCGCGCGTCCAGGTGTAGCCCAGTAAACACAAAGCCCTTGCAAAAATACTCTTGCTTTTGCAGCTTAGATCCTTTTTTGAGCCCAGCCTGCAGTTTAAGGAGATGCCTAAAGCCGTGGCTTCGTCTCGTGCTGCCCTCTGCCAGGAGAGCAAAACGAAGAGTAATGCGCAGgGCCGAAGCACTGACAGCAGCGCAGCTGACGGCCCCTTTGTCCCCACGGTCACTGCCATAGCCACGGCTCCGGATCTGAAGTGGATGGTCCTGTCCACTGACATTTCATCAGTCAGTCCCTGCAGCGGTGCTGCAAAGCAGAGGAGAGCGCAGAAAAGAGCCAAAGCGTCTGCGGCCAAAACAGGCCACGGGGGCCCTGCAGGCCGGAGGAAGGGACAGAAAGAGCAGTTGTCCccagaggaggaagagagaagaaaaatccGCAGGGAAAGAAACAAACTGGCAGCAGCGAAGTGTCGAAACCGTCGCCGGGAACTCACAGACAGTCTGCAGGCGGAAACTGACAGTCTAGAGGAGGAGAAGGCGGCTCTGCAGGCTGAGATCACCAGCCTGATGAAGGAAAAAGAGCAGCTTGAGCTTCTGCTCACCGCCCACGAGCCCCATTGCAAAATCCCTGAAGAgatgcaggaggaggaggaggaggacatgTCCGAAGAGCCCGAAAAACACACCCTTGTGCTTCAGGACGTCCGGTCGCCTTCACCAACAACCAGCCTGGACAAGACCCCTACCTCTCCTCTCGGCCTTCATGAGGTTCCCACCGGGCCTCAGGAACTGGAACCCACTGGCCCTATCATACTGGGAGACTCTGACGTTCTCCTGTGCTCCAGTGCAGAGTTGGAACCCTACATAGATGCAAAGGAAGTTCCAATGGAGAATCTGGGCTCCAAGCTTGGTGGGATGGAAGATGACAACGATGACGACATGGACCTGCTGGTGCCTGACATTGACCTCAGTGCATCACTGGGCCTGACTGAGTGGGAGACCCTCTACATGACAATAGGGGGCAGTTTGGACCCTCTCAGTACTCCAACACTAAGCCCAGGCTGCAGTGCCGGAGCTGTGCCTGTGTTTGACTTTCCAAACCTGAGCACAGGAGGATCAGAGGATGGAAAAGTTCCTAAAGGCAAAGCAGGAGGAGATAACTCGACCCTGCTGGCTTTGTGAAGGCCAAAGCCAAAAGACAAATTACATTAGAACCTGTCTGTACCTGCATGACCGTCTTGATGTGTTTATGCACTTTGGAGGATCTTTGAAACACCATGTTGTCCCTGTGAGATGACCCAGAGGAACTGTTACGAAGGCgtttaaaaagtgtttctgTTAAAGAATTGCTGTCTGTGCAGTACTCAAAAAAGGTCACTGGCATGGGTGAAAGGGTACTAGGAAACTAATTGGTGGAGAACAGGGGTAGGGGTCTCTACACCTGAATACTCAGATTTTGCGATTCAAACTCATCTGATTTACTTTGTCTGGAAATTACAAGAAACAGTCAATTAGAACAGAAATGGGCTGTCAGCAAACTGGGCTTAGCTCACTGACCAAAAATGACCATAATTAACCTTGCTAAtgagctttatttttattggctGCCATGTACCAGCTTTCAAACCCCCTTTATAACTTCAGTGGGAATGGGCAGGAATAAACTGCTTACCTAACATAAAGTGGATATATTtcaaaccacaaaaaaacaaacaattgaaAATATCTAGCTTAATTTCAGGAACTAATTGCATCAACATTATGCAAAGCAATATATTGTTGGTTTTCTGAACATGAATTAAGGCTGTTAATACAAAATGGTCTAAAAGTCTATATTGGAAGATTAACATGGCCAATATGACCAATAGTGAACGACTTTGGAAGGGAATCATGCACAGGTTCTCGAACGGGGGCAAAAATTGGTTTGTTGAGGTCCGTTTGTTAAAGTCAGTGTGAAGAATATGTTGTACACAGTGCATGTGCTCTACAGTCACCCCCCAGCCCCCACCCCCAGCACACTGTGACTAAATCATTTCTTCCAGGTGGCAATGTGGTGGACATGTTTTCAATGGGATCGTTTATGCACTTTTGTACCACGTGGACTGAACTACGTCACTTTCATCCTGTTGTGGATCTCGTGCTTCATTGTACAGTCTGTTACCGCGGCTGGCCGATGTTAccacacataaatatacatataaatatattgatattgtgaaatgatattttgaatattgtaatattgtcctcaaatattgtgtttatctCTGGCTGTCGATGCTGCACTGACTGGGTTTCAGTGATAGGTCAGTTTTGAGCTTTATTAGTTGTTTGTAGGAGAATGAAGAGCACTCAGATTCCACCACAGCTTCATCTAGAGAGAGTTTGGAGAGCATATGGAGCTGTAGTGTTCTCACAGTCTGGCATATAATCTCACAGTAATGTGCTTATTGTGATATTCTCGTCTGGTAATATAATGTGTAGACTGCATCACCACCCCCAGGTGTGCTGCAGAGTCtcggtgtgtaagtgtgtgtgtaaatagcaGCTGTGTGTGAAGGTGCTGATTTTCCAATTAAATGTGATTCCTGTGAGAAGAATCATACCATATTTTGaa

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608509.2 True 3086 mRNA 0.47 4 39356694 39361435

Neighbor

gene id symbol gene type direction distance location
LOC103034748 LOC107708319 coding downstream 49905 39274499 ~ 39306789 (-)
LOC103044372 wdr26,LOC103044372,LOC108414895,LOC103363787 coding downstream 83412 39251044 ~ 39273282 (-)
LOC103044694 LOC103044694,LOC108414893 coding downstream 110080 39223883 ~ 39246614 (-)
LOC103046220 LOC103046220 coding downstream 153697 39199438 ~ 39202997 (-)
slc35a1 slc35a1,LOC106607707 coding downstream 164613 39173990 ~ 39192081 (-)
tmed10 tmed10 coding upstream 20765 39382200 ~ 39387492 (-)
zc3h14 zc3h14,LOC102797374 coding upstream 37571 39399006 ~ 39408918 (-)
rad51 rad51 coding upstream 70228 39431663 ~ 39439043 (-)
LOC103041222 NA coding upstream 79635 39441070 ~ 39453885 (-)
LOC103039762 flvcr2b,LOC108432874,LOC103039762,LOC108242486,LOC108255188,LOC107697188 coding upstream 164586 39526021 ~ 39557879 (-)
LOC111191798 NA non-coding downstream 147429 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 168416 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 203243 39147559 ~ 39153451 (-)
G24843 NA non-coding downstream 298128 39058005 ~ 39058566 (-)
G24842 NA non-coding downstream 298793 39057567 ~ 39057901 (-)
LOC111196213 NA non-coding upstream 111389 39472824 ~ 39480344 (-)
G24911 NA non-coding upstream 137608 39499043 ~ 39499466 (-)
LOC111196215 NA non-coding upstream 153034 39514469 ~ 39524274 (-)
G24964 NA non-coding upstream 363020 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 457841 39819276 ~ 39825981 (-)
LOC103043888 LOC108432835 other downstream 9778 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 31992 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 429701 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 433777 38887626 ~ 38922917 (-)
wisp3 wisp3 other downstream 729642 38611046 ~ 38627052 (-)
G24903 NA other upstream 93801 39455236 ~ 39458189 (-)
LOC111196341 NA other upstream 813827 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1852986 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 2074606 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2494660 41856095 ~ 41865844 (-)

Expression


Co-expression Network