sod2 (sod2,LOC107732630)


Basic Information

Item Value
gene id sod2
gene name sod2,LOC107732630
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42762414 ~ 42766097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608723.2
AATTTCAAGGGCAGGTTAGAatggagtgagtgagagggggAGTCGCAGCTGCTCAGAGCTCACTGTCAGAGACACCGCTGTAGAGAGAATAAGAACATGTTGGGCAGAGTTGGACATGTTCGCAGGTGCACAGCCACCTTAAACCCTTTGTTGGGTGCCTTGGCCTCAAGACTAAAGCACACACTTCCAGACCTCCCTTATGATTATGGGGCACTTGAGCCCCACGTCTGTGCTGAGATCATGCAGCTTCACCACAGCAAGCACCATGCAACATACGTCAACAATCTCAACGTTACTGAAGAGAAATACCAAGAGGCCCTGGCCAAAGGTGATGTGACAACACAAGTGGCACTTCAGCCAGCTCTGCGGTTTAATGGTGGTGGTCACATCAACCACACCATTTTTTGGACAAACCTGTCCCCAAATGGAGGAGGAGAGCCACAGGGTGAGCTTATGGAGGCCATTAAGCGTGACTTTGGCTCATTCCAGAAGTTTAAGGAGAGGATGTCTGCTGCTACTGTGGCAGTTCAGGGGTCAGGATGGGGGTGGCTGGGCTTTGATAAGGAGAACAGCAGACTGCGAATTGCTGCCTGTGCCAACCAAGATCCACTACAGGGAACCACTGGTCTTGTTCCATTGCTTGGCATTGATGTTTGGGAACATGCTTATTACCTTCAGTACAAGAATGTTAGGCCGGACTACGTTAAGGCCATGTGGAACATTGTGAACTGGGAGAATGTTAATGAACGCTTTCAAGCTGCAAAGAAGTAGATGATACACCTGTGATTAAGAGTTCTCCTAACATTTTTCTTACAGAACGCACAAATAGCCCGAAACATTGTTGCAATCAGATCCTGTAATGACTAGTACAGAACCATGAGGAATCGTTTTTGGCAAGATCAAAAAAGGTTGTTTGTCAGAAATAGTTGCCATGGAGTAACTAAGATGGTGTAAGTTTGTATTGTCAGAgtatgtaattaaaacattatttgaaCTAA

Function

symbol description
sod2 Enables superoxide dismutase activity. Acts upstream of or within several processes, including neutrophil homeostasis; removal of superoxide radicals; and response to methylmercury. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; hematopoietic cell; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); lipid storage disease (multiple); liver disease (multiple); and optic nerve disease (multiple). Orthologous to human SOD2 (superoxide dismutase 2).

NR:

description
superoxide dismutase [Mn], mitochondrial

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051597 response to methylmercury biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04564 SOD2; superoxide dismutase, Fe-Mn family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608723.2 True 998 mRNA 0.46 5 42762414 42766097

Neighbor

gene id symbol gene type direction distance location
LOC103035072 NA coding upstream 46102 42555881 ~ 42716312 (+)
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding upstream 211341 42539342 ~ 42551073 (+)
LOC103034213 NA coding upstream 238341 42516732 ~ 42524073 (+)
LOC103042546 LOC108411077 coding upstream 266096 42403920 ~ 42496318 (+)
rnaseh1 LOC107693208 coding upstream 436010 42317523 ~ 42326404 (+)
LOC103039464 NA coding downstream 147943 42914040 ~ 42916599 (+)
otof otof coding downstream 156496 42922593 ~ 43034392 (+)
LOC103041928 pdia6,LOC108411347,LOC107732640,LOC107693218,LOC107549125 coding downstream 278095 43044192 ~ 43051887 (+)
LOC103031260 NA coding downstream 326068 43092165 ~ 43111188 (+)
LOC103030938 NA coding downstream 349681 43115778 ~ 43135388 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding upstream 2443 42753358 ~ 42759971 (+)
G25657 NA non-coding upstream 32905 42727634 ~ 42729509 (+)
G25647 NA non-coding upstream 44025 42717658 ~ 42718389 (+)
G25650 NA non-coding upstream 156286 42605901 ~ 42606128 (+)
G25625 NA non-coding upstream 242472 42519641 ~ 42519942 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding downstream 563430 43329527 ~ 43341729 (+)
G25834 mgat2,LOC107728126,LOC107564584,LOC107704380 non-coding downstream 584798 43350895 ~ 43356027 (+)
LOC111191905 NA non-coding downstream 697503 43463600 ~ 43465928 (+)
G25888 NA non-coding downstream 717998 43484095 ~ 43484399 (+)
G25893 NA non-coding downstream 750701 43516798 ~ 43517094 (+)
fgfr1op NA other upstream 245772 42497722 ~ 42516642 (+)
G25601 NA other upstream 369476 42391640 ~ 42392938 (+)
G24972 NA other upstream 2936696 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 3364536 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 3421443 39325083 ~ 39340971 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 493523 43259620 ~ 43262099 (+)
rps29 NA other downstream 594372 43360469 ~ 43363444 (+)
G25879 NA other downstream 655674 43421771 ~ 43422046 (+)
G25880 NA other downstream 658295 43424392 ~ 43424906 (+)
LOC103033920 LOC108416105 other downstream 724226 43490323 ~ 43494316 (+)

Expression


Co-expression Network