tbc1d32 (tbc1d32,LOC107602184,LOC107675228,LOC107727650)


Basic Information

Item Value
gene id tbc1d32
gene name tbc1d32,LOC107602184,LOC107675228,LOC107727650
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47139549 ~ 47200208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022661980.1
CTATAGTGACGCCGGTTGTGTGCGGACAGGCTCTCTCTGGCAGTGGTTAGGAGATTAGCTTGTGCTCAAACTCCGCTTTTTCAGCTCCGTTAAAAGATTTTCTACCttctaaaggtttttttttttcacatcttCTCGGATGAAATGAACCTTGGTCAGGAAGTCCTTGGTAGAGAAGGGTGCATCACACCCCCTGTGGAGTGATGTCTCAGTTTTCTGCAGAGGATGAGGCTGAGCTCCAGTGCCTGCTGAGGCAGCTtctaaaaagtgtaaaagagaGAATATCAGGGGCGCCATCAGTGGAATGTGCAGAGGAAATCTTGCTGCACTTGGAGGAGACGGACAAAAACTTTCACAATTATGAGTTCGTCAAGTACCTGCGACAGTATGTTGAGAGCACACTGGGGGCAGTTATTGAAGAGGAGACGGATAACTGTACCAAAGGTGATGGCCATGTCATTGGATCTGGCCAGGACACCCTGGTCCATGCTGTCACCAGAAGAACAAGGGAATCTGCACAGTATAAACAGATGATGCAGACATTAAAACAGACCATGATGGTTATTGTGGAATCACTAATCAATAAATTTGAGGAGGATCAGTTGAAGAAGGAGGAGATGCATAGGAAAAGCCAACATGAACAGTCAAGCAGCCACTACACAGACAACTGCTCTGACAGTGACTCTTCCTTTAATCAGAGCTATGCCTTCATCAAGCAGGAGCAGCTTCAGGTCATTTCTGAGAAGCTTGACCCAAGTAGGCCTATAGAGGTTCGCTGGGAAGCCTTGCAGTCTCTGTGCTGTGCTCCTCCCTCTGACGTACTGAGCTGCGAGAGCTGGACTGGTTTACGTAGAAACCTCTCAGCAGCTCTGGCTGACCCTGACCCTGACCTCAGTGATAAGGTTTTGCGCTTCTTTGCAAAAACATTTTCTTCCTCTCCACTGAACGTGACAAGGGAAATTTACACCAGCTTGGTGGAAAGTTTGGAGAGTGACTTTATGTATCACAAGATAGGATTTTCCACTGAGTCAGCAGGTGTAGATGTGAATAGGCCAGATATCGCCCGTCTGCTTAAGCAAATGCGATTAATGAACGACTTCCAGAAAGAAGTGACCACATTTTGGATTCGCCATCCTGAGAAGTACATGGAGGAAATCATTGAGAGCACTCTTACACTTCTCTCTCTACATCCTGAACATGGCATAGGCAATCATGGCTCGGAGAAATCTTTAGATCCAGTCCATTTTGTCTCTCTGCTGGACATCAAAGCCACCTGGTTCACAAAGTGGATGCATGGCTACTACAGCAGAACTGTTGTGTTGAGACTTCTTGAACGGAAATACAAGTCAGTGATTGTTATGGCTGTTCAGCAGTGCATTTACTACTTTGAGTCCTATGACCCTGTGAGAGAGGAAACCTTGGAGATCACACATGCTATGGAGCATCAACAGATAGATTCCTCTCAGAGAAGCTTTTACAGCGCTAAGGAGCTGGAGTACGCTTTCTTTGTTCACTCACTCTGTGTGCTCGGGAGGCTGCTGATGTACACCAATGGGAGGAAACTTTTTCCCATTAAAGTGAGGAAAAGGAGAGATCCGGTATCTTTGACCGACCTGGTGGTGATCTTGATCAATATTATGTACCAGCACCCAAACACGTCATATGCCATTCATTCTACTCACACAGACTCACTTTGTCCCACTGCCCTGGTGATGGAGGTCCTAAAAACCCTATGTGAACGAACTGAGTGTGCTGTGGAGTGTATCTACCAAACCCCTGTCATAGAGACCCTGCTGGCCCCCATCCTTGCTTTACTCAAAGGAAAGCCGGCCAAATTAAACTCTCCAGAAAGTAGTCTCACGCACATTGCGGACACGCTGGCAAGaatcaccaccacccagcgtGGGCTGGCATTGTTTCTTTATGAGAGAAAGCTTGTCTGTGCTGAGGGTGAAGGtatctCAGCAGCCCATGTTATAGTGCAGTTTACACAAAGGCTGTTGGCTAAGGAGTTGCCCGCATCCACAGAGCTGGAAAACTCCCCCGCTGTGAAGGGGGCCTTCATCTTTGTGTGCCACCAGATGTACAACACCTGCGAAGGGCTGCAGGTGCTCAGGCCCTACAGCCTGCATGAGTGTATTGCTAAAGCCTGGAGAAAGACAAGCTCCCTATCAGAGAGAGTCCCCACCCCTGTCCCTGGAGCCGTCACATCATCATCCTCTCAAGATCTCCAAAATGCAGTTGCCTGGGAGGAGGTGCTGCTGGACAATCTGCTGAACTTTGCAGCCACACCTAAAGGCCTGCTGTTGCTTCAGCAAACCGGAGCTATCCATGAGTGTGTCACCTACATGTTTTCTAGGTTCACCAAAAAGCTTCAGGTGTCCAGGTGTGAGAAGTTTGGCTATGGTGTAATGGTGACCCAGGTTGCAGCTACAGCTCCTGGTATTGTGGCTTTGCACAGTTCTGGTTTCATCCAGGCCATTGTGGTTGAGCTGTGGTCAACATTGGAATGTGGCAGAGAGGACATAAGAGTTGTCCATCCCAAATCTACTCCAATGGATCCCATTGACAGAAGCTGCCTGAAGtccTTCGTAACACTAGTGAACCTGCTGTCCTCTCCACATGCTGTGTGGGAACTGCTAGGCCACCAAGCTCTACCCAACAAGATTGAGTACAACCTGAGGGAAATGCCCACATCTATAATTGATGTGATGGACCGCCTCATTGTTATTAGCTCAGATGCAAAGATACACTCCCTGTTCAACTATGAGCAGTCACACACGTTTGGCCTGAGACTCTTAAGTGTGATGTGCTGCAGCCTGGACTCTCTCCTGCTGCTGGAGTCTCAGTACAAGCTCTCTGACATTTTGCTACAGAGTCAGAAGGACAATGCCATAGATTCTCCCTCTGGTGACGGGGAGTACATCATTGATGGCCTGACAGTGGAGAGGAACCACCTGCTGGTTCGGATGAGTGTGACTGGTGGCCCTTCCGAAAGGACACTTCCTCCCAGAGCTCTGGACAAGGGGAGTGATCCATACCCATGGCCTATGTTCTCATCCTACCCCGTGCCTAACTGTTATGTTCTTGATGTGACAAAAGCATCACGTTCTAAACAAGacTCCGAGATCAGTGCTTTACTGGCCTCATctaaagacacagagagagatgagaaCTGGATGGAGAACTGCAGGAGACACTTCTGCAAAGCCATGACATCAAAATCCACCATTCTCACTGGAAACgTGTTGGCTGATCTGGTGGAGAGAGCAGTGCTGCACCTGTCCTCTTCTCCAGCCAACTGCTTCTTCCCTCCTGCAGAATATAAAGtggTGGATCACTATGTAAAGACTCGCAGCCTGACATCTGTGGAACAGCTGGGCATCAACATCTCTCTCAGGTATGGTTTATTCCTGAAGTTGCTGAGGGAGGATTCTGAACAGGATCTCTGTCTTCTCATCAAACACAGTCAGGAGTTCCTCTCTCAGCAGCGTGTCACACTACAGTCTGAACTCTGTTATCTGCGAGGAGGCTACCCTGGCCATGACTGGTTCGCCTCCACCGTCTTCTTGCTCATGGGTGGAGACGTGGGCCGTTCTCTCAGTCTGCTGCTGCGTTTCTCACGCCTGTTGCCCTCCGCCTTCCTCTGGCCACCCAGAGTCTACAGCTCTGTGCATATCCCGGTGGAAATGGCTCAGTCTGGAATCCCTCTGCTGTACTCATGCACCGCTCACTATGTGGAGATGCTGCTGAAGGCAGAGGTGCCTCTAGTCTTCTCAGCCTTCAGGATGTCTGGCTTCACTCCATCTCAGATGTGTATTCAGTGGCTCAGTCAGTGTTTCTGGAACTACTTGGACTGGCCTGAGATCTGTCAATATTTGGCCACATGTATCATCTTGGGACCAGACTACCAGGTGTATATGTGCATCGCTGTGTTAAAGCACCTGCAGCAGGACATCCTCCAGCACACACAGACGCAGGACCTCCAGGTCTTCCTTAAGGAGGAACCCATCCGTGGCTTCAGAGTGAGCGATTATCTGGAGTATATGGAGAGCCTGGAGCACAGTTACAGGGGCATGGTGCTTGCGGACATGAGGAGCATCTTACAGAAGAACACCTAGCATTTCTGAGAGCTCTAAGAGCCTAACACTACATTCACCTTTGTAAAATTGCTCAGGGTAATGGCATTAACCAAGTACTGTAAACAAAAGAGATatcaaaatcagtgttttactgATTAAGTATAGcaattttccaaaacatattAATCTTAGTCCTGTTCCTAAGAGAAAAGAATGTTCAGTAgttattcataaaggtttaacaATAATTCAGTGTCCAGTATCCTGAAAGGCAGCTTGGTTTGTAGAGTTGCAGCAATATGGGAATGctgaactgtgttttttttttctctacataTCTGTGGATGCAGATGCATGGACTTAGTATACATACCTAAATGTATTCActtcaaaaaatgttaaaatggcgGCTACATGCACCTGGATTTGCATTGCTTTCTAAAAGGAATTGTACTTTGCcaaatgaaattattttaaacataatcaCATTATTTCATCTTTCTCATTTAGAAATGTATTCCTTgatgtttttactgttaaattaCTTGTGTTTAGTGAAAGTGTCAAATTCTTTTGGTAGATAACTATgacaatcatttttattataaaaagggTAATTATCTACCAGTAGAGTTAGAcattcacaaaaataaataataataaaaaaggaggGAGGAATCATAATCCTATAATATCCTTACAACATAATTAAATTTTGCTTgctaatttataatttatgcattgctgaaaaatgtaaaaaaataaaataaataaataaataaaccaaccTAACCTGAATACatacaatcaaatattacataatCAAATACATAATcatacataataatacataatcaaatattagtttaaaaatattGGTCATATCTGTTAAATGCAGAGAAATGTCTATTTTGTTATATCTCTGCAGATACTGAAATGATACTGATATCATTCTGCATCTTTCATCTGCagaattaatgtttttctttttcttttctaagGTACAAAAGACACATCCTGTGTTCTACACAGAAATATAAGACAAGACGCACAACATGCTGTGTGGAGCGTGACAGTATTTatattgaagtgtgtgtgtgttggtgtgtgctATTTTAGATAGACAGGTGAATGCTCTTTTATAACATGCCCTGTACAGTTCtttcttgttttaaatatcatgtATATATTCATTCTGTTTCACCTCAGTGAACCCAGTTGTGAAGTTACATCTCTGTGAGTAAACAGTGACTTGTATTTAA

Function

symbol description
tbc1d32 Involved in axoneme assembly. Acts upstream of or within cilium assembly. Predicted to be located in cilium and cytoplasm. Orthologous to human TBC1D32 (TBC1 domain family member 32).

NR:

description
protein broad-minded

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0060271 cilium assembly biological_process
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022661980.1 True 5344 mRNA 0.45 35 47139549 47200208

Neighbor

gene id symbol gene type direction distance location
LOC103044458 LOC108424466 coding upstream 20535 47115452 ~ 47119014 (+)
prpf39 prpf39 coding upstream 613723 46519113 ~ 46525826 (+)
otx2 LOC108410484 coding upstream 678735 46456013 ~ 46460814 (+)
c3h14orf37 LOC107659812,LOC107574488,LOC107704373,LOC107713862 coding upstream 709500 46420148 ~ 46430049 (+)
entpd5 LOC103043327 coding upstream 787349 46341857 ~ 46352200 (+)
man1a1 man1a1,LOC107727625 coding downstream 193039 47393247 ~ 47590416 (+)
LOC103032605 NA coding downstream 718138 47918346 ~ 47926402 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding downstream 740229 47940437 ~ 48196539 (+)
mcm9 mcm9,LOC107549683 coding downstream 1000728 48200936 ~ 48219344 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding downstream 1032062 48232270 ~ 48311540 (+)
G26770 NA non-coding upstream 33227 47105420 ~ 47106322 (+)
G26766 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 non-coding upstream 44636 47089537 ~ 47094913 (+)
G26762 NA non-coding upstream 126851 47012364 ~ 47012698 (+)
G26725 NA non-coding upstream 369882 46748490 ~ 46769667 (+)
G26717 NA non-coding upstream 476118 46662137 ~ 46663431 (+)
G26827 NA non-coding downstream 150420 47350628 ~ 47350899 (+)
G26857 NA non-coding downstream 467205 47667413 ~ 47670470 (+)
G26860 NA non-coding downstream 471768 47671976 ~ 47672187 (+)
G26861 NA non-coding downstream 478794 47679002 ~ 47681080 (+)
G26862 NA non-coding downstream 480985 47681193 ~ 47681712 (+)
fau fau,LOC108411505,LOC107704371 other upstream 589996 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 3645233 43490323 ~ 43494316 (+)
G25880 NA other upstream 3714643 43424392 ~ 43424906 (+)
G25879 NA other upstream 3717503 43421771 ~ 43422046 (+)
rps29 NA other upstream 3776105 43360469 ~ 43363444 (+)
G26915 NA other downstream 1078059 48278267 ~ 48315894 (+)
G26995 NA other downstream 1355589 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 1378595 48578803 ~ 48618075 (+)
G27075 NA other downstream 1541006 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 2247637 49447845 ~ 49448221 (+)

Expression


Co-expression Network