LOC103035465


Basic Information

Item Value
gene id LOC103035465
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48649688 ~ 48654677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662030.1
tctctctctctctcagtcggAGAGCAGGAAAATGGCAGAGGTCTCTATTTCCATAGATCGGGATCAGTTCAGCTGTTCAGTCTGTCTGGATCTACTGAAGAATCCAGTAACTATTCCCTGTGGACACAGTTtctgtatagtgtgtattaatGGACACTGGGATCAGGAGGATCAGAGGGGGGTCTACAGCTGCCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTACGCAGAAACAACATGGTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCGTGCTCACTGTAACGCTGGAGCTGGAGATGTGGAGTGTGATTTCTGTACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTTTGGTGTGTGTAGCGTCTCTCTGTGAAACTCATCTTAAACCTCACCTGGAAATTCCAGCCTTGATGAAGCACAAGCTGGTGAAAGCGTCCACACGACTACAGGAGAAGATCTGCTCTCAGCATGATAAACTGATCGAGATCTACTGTCGCACTGATCAACAGTTAATCTGTTATTTATGTGCGATGCATGAACACAAAGGACATGATACAGTTGCAGCTACAGCAGAAGAGAAACAGaaaatccAGGAGAGAATCCAGGATAAAGAGGAAACTGTGCAGGAACTCAAACAGGCGGTAAAAACTCTTAAGAGCTCTGCACAGtcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGGAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACAGAGTGCAGCTGAAGAACTcattgaacagctggagcaggagATCACTGATCTAAAGAGGAGAAacactgagctggagcagctttcACACACAGAGGATCAAGTACACTTCATCCAGTCTCTCCACGTCTCTTCTGGATCTGATCAGTCACCCAACATCAGTGTCTGTCAGCATCTCTCATTTGATGAAGTGATCAGATCTGTATCTGATCTGAAACAGCAACTAGAGGAATTGTGTGAAGAGAAGTTCAGCACAATGTCTCCACATGCTGCAGCAGTTCAGATTTTACCCTCAGAACCAAAAACCAGAAAAGACTTTCTGAAATattaccGGCGGCTGACTCTGGATCCTAACACAGCACGTGCGCACCTCAGTCTTTTTGAGAAGAACAGAATGGTGAGACGCAatcatgatgttcagcagtatcctgATCATCCGGAGAGATTTGATTACTGGTGTCAGGTGTTGAGTAAGGAGAGTATGAGtggacgctgttactgggaggtTGAGTGGAGCAGTTGTCAATatgtgtacatagcagtgtcaTATAAAGGGATCAGAAGGAAAGGAGGATGTCATGAAGGTTGGTTAGGACACAGTAATCAGTCTTGGAGTCTGGTgtgttcttcctctctctctttctggcaCAACAACATTGAGACTAGGCTCTCAGCTCCTCCATCCGCCAGaataggagtgtatgtggatcACAGTGCAGGAACTCTGTCTTTCTACAGCGTCTCTGATACAATGACCCTCctacacacagtccacaccacaTTCACTCAGCCCCTCTACGCTGGATTTGACTTTCCTGATTATAATTCCACTGTAAAGTTATgtgatttaaaatgaatgtgtaAATTGGGTAATAAAGATGATGGGGTTAACCTTGCTAATTCCTCAGTGGTAAACACTGCTTTCACACAAACACTTGTACTTATGTTTAACATATATATGTTCTTTACTTGTTTTAACCAATAATCCAAGCAAATCAATTAATAAAGGTTAAATTTGtgctacatttatattta
>XM_022662038.1
tctctctctctctctctctctcagtcggAGAGCAGGAAAATGGCAGAGGTCTCTATTTCCATAGATCGGGATCAGTTCAGCTGTTCAGTCTGTCTGGATCTACTGAAGAATCCAGTAACTATTCCCTGTGGACACAGTTtctgtatagtgtgtattaatGGACACTGGGATCAGGAGGATCAGAGGGGGGTCTACAGCTGCCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTACGCAGAAACAACATGGTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCGTGCTCACTGTAACGCTGGAGCTGGAGATGTGGAGTGTGATTTCTGTACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTTTGGTGTGTGTAGCGTCTCTCTGTGAAACTCATCTTAAACCTCACCTGGAAATTCCAGCCTTGATGAAGCACAAGCTGGTGAAAGCGTCCACACGACTACAGGAGAAGATCTGCTCTCAGCATGATAAACTGATCGAGATCTACTGTCGCACTGATCAACAGTTAATCTGTTATTTATGTGCGATGCATGAACACAAAGGACATGATACAGTTGCAGCTACAGCAGAAGAGAAACAGaaaatccAGGAGAGAATCCAGGATAAAGAGGAAACTGTGCAGGAACTCAAACAGGCGGTAAAAACTCTTAAGAGCTCTGCACAGtcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGGAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACAGAGTGCAGCTGAAGAACTcattgaacagctggagcaggagATCACTGATCTAAAGAGGAGAAacactgagctggagcagctttcACACACAGAGGATCAAGTACACTTCATCCAGaATTTCCAGTCTCTCCACGTCTCTTCTGGATCTGATCAGTCACCCAACATCAGTGTCTGTCAGCATCTCTCATTTGATGAAGTGATCAGATCTGTATCTGATCTGAAACAGCAACTAGAGGAATTGTGTGAAGAGAAGTTCAGCACAATGTCTCCACATGCTGCAGCAGTTCAGATTTTACCCTCAGAACCAAAAACCAGAAAAGACTTTCTGAAATattaccGGCGGCTGACTCTGGATCCTAACACAGCACGTGCGCACCTCAGTCTTTTTGAGAAGAACAGAATGGTGAGACGCAatcatgatgttcagcagtatcctgATCATCCGGAGAGATTTGATTACTGGTGTCAGGTGTTGAGTAAGGAGAGTATGAGtggacgctgttactgggaggtTGAGTGGAGCAGTTGTCAATatgtgtacatagcagtgtcaTATAAAGGGATCAGAAGGAAAGGAGGATGTCATGAAGGTTGGTTAGGACACAGTAATCAGTCTTGGAGTCTGGTgtgttcttcctctctctctttctggcaCAACAACATTGAGACTAGGCTCTCAGCTCCTCCATCCGCCAGaataggagtgtatgtggatcACAGTGCAGGAACTCTGTCTTTCTACAGCGTCTCTGATACAATGACCCTCctacacacagtccacaccacaTTCACTCAGCCCCTCTACGCTGGATTTGACTTTCCTGATTATAATTCCACTGTAAAGTTATgtgatttaaaatgaatgtgtaAATTGGGTAATAAAGATGATGGGGTTAACCTTGCTAATTCCTCAGTGGTAAACACTGCTTTCACACAAACACTTGTACTTATGTTTAACATATATATGTTCTTTACTTGTTTTAACCAATAATCCAAGCAAATCAATTAATAAAGGTTAAATTTGtgctacatttatattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662030.1 False 1839 mRNA 0.45 6 48649696 48654677
XM_022662038.1 True 1856 mRNA 0.45 6 48649688 48654677

Neighbor

gene id symbol gene type direction distance location
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding upstream 27776 48620730 ~ 48621912 (+)
amd1 amd1 coding upstream 84087 48541535 ~ 48565601 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 338148 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 430344 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 453149 47940437 ~ 48196539 (+)
LOC103035149 NA coding downstream 17410 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 35447 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 44936 48699613 ~ 48707949 (+)
ginm1 ginm1 coding downstream 56896 48711573 ~ 48722910 (+)
casp8ap2 NA coding downstream 229325 48884002 ~ 48895979 (+)
G27008 NA non-coding upstream 14846 48634444 ~ 48634842 (+)
G26996 NA non-coding upstream 82394 48562604 ~ 48567294 (+)
G26994 NA non-coding upstream 96531 48552849 ~ 48553157 (+)
G26993 NA non-coding upstream 97021 48552233 ~ 48552667 (+)
G26982 NA non-coding upstream 199232 48418832 ~ 48450456 (+)
LOC111188407 NA non-coding downstream 9978 48664655 ~ 48668564 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 68654 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 110812 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 199835 48854512 ~ 48874216 (+)
G27150 NA non-coding downstream 249979 48904656 ~ 48906548 (+)
G26995 NA other upstream 7783 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 31613 48578803 ~ 48618075 (+)
G26915 NA other upstream 333794 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2100135 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5155372 43490323 ~ 43494316 (+)
G27075 NA other downstream 86537 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 793168 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1684887 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2090206 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 2115186 50769863 ~ 50772162 (+)

Expression


Co-expression Network