G60370


Basic Information

Item Value
gene id G60370
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15311531 ~ 15320285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU68723
CTTCCTTCCTTGTTTTTTCTTCTTTCTCTTTCTATCATTATTTCCTTCCTTCCTTACGTTTGTTCTTTCTTTCCTTCCTTCTTTTCTATCTTTCATTTGTTCATTCCTTTTTTCTTTCTTTCCTTATGTTCTCTCTTTCTTTCTTGTTTGTTCGTTCCTTTCTTTCTTTCTTTCTTTCTTTCATCCTTTCTGTCTTTATTTTGTCCTTTCATCATTTTCCTTCCTTACATCCTTGCTTCTTTATGTCCTTTCTTTCGTTCATTCTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTCTGTTTTTCGTTCTGTGTGTTTGGGTGAGAGGCTGTGTGTACGTGTGGTTGTGAATGTGTGAGGAAAGGTTATTCGGACGGTATTGAGGAAGAGGGACAGAGGAAGTGCAGTGTGGGCGTAGAGGAGTGAAGTACAGAGGGGAGGTGATCTTCATCTCACTTGGAGGGGACGTGGAAATGATGTCAGTGATTTTGTTGCTTGTTTTTTAGAAAAAAGGACAAGAAAAAGTAAAAAAAAAAAAAAAAGTTGATGAGGAGGCTGAAATCTGGGGCTGATGTACCAAAGATAAGAGAGCAGTCAGGACAAACCAATCATTACTCAAGCGTCCTTGTATATCTTGGTAAACCACAGCTGCTTCGTCAAAACTGTACATATGAACTGAAGCATCACCTCTTTTCCTTCTCAAAGCGGCTCCGGTTTCTCACGCTACAAGTGCAAGACTATTTCATATGCCTACTAAAAGCAGTTTCCAGTCCACTCCGGATAAACTCAAAACCTTGTGGGGTTTTTTGAAGGTCCCTCGCATATAACAGACCTAGCAGAAGCTAAAAGTGAGGACGAATGAGACATCTTCACCCTCAAAAACGCTCCTCAGAGAGAACATGGGATGCTGGAGTCATTTCAGTAATTCAGCGTCTCCGTTCACCTCTGGTCCATAAATATCCAGCAGTTAACACCTGTTTCTCTACTTGGAAAAGTGCAGTACAATGGCACCTGATTTCCAGGTTCATTACTGAAGCCGGATATGGGAGATGTCTACTGAAAATTTCTGTTGCCTGAAACTCAATTTTGCAGGTGTTTAACTGCCAACAAACAGTAAAGCAACCAAATCACATTCTTTGTGCAATGCTAGCTTTTGTTCTGCAGGTATATAATTGTCAAAAAACATTTTATTTGCTTAAAACTGAACGTTTATCAGTGCACATCTATTTTGGTGCCGCCATATTCGCATGAGGTCATACATACCGTCAAGTCACATTTGTTTATATAGCACTTTATAGAATACAGAAAAAGTTTCAAAGAAGCTTCACAGTATAATAACCGTGTTCATTTTACGAAATTATCGAGAAATATCTCTGAATTCACAGTAATAGATGGACGTCCGACTTTAGGTGCCATTCTGTTGCACTTTCCAACAAGGTAGTTAGTAAACTGAGCTAAATGAAGCAACATATAACACAAATCTCCTCAAGATCGTTTATGCAAGTGTCCAGCGTCGCCTTTTAGTTCCTGGTCTCAGGTCTTCACTTGCTAGCGTCCGTTAGCCGCTGCTGAGCTCTCTTCTCTTCAGGTCTGAGTGTGTATCACCGTGTATCTGGCAGTAAGGTGTGAATCTGTCACTGTATCTCTATGCCTCGCTTAAAACACACTCTCACACTATCATTCTACCCCAAAGTAAGCTAAGTATATATACTTCAAAAAGTGATTTTACTGAATATTTATTGTATTATTATGTTTTTGCTACTTTTTTGCGCTATGTTAACTCATTTACCCATAGATATATTGTATAGTCTACATAAAGATTAGCCTCCTAAAGAAATACTCTTTATTTTGGCTAATATTTCAAAATCATGAGGTTTTCAGAAGCATTCTATTATATATGGTGTAAATTGTATGTATTTGGAAAGCTTGACATTATTGGATATTTTCTCACATTTTCTTTAGCGTTAGATCGACATTTTAAATAGAACTCACTGTCGCTTTTGCATACATCCTAAAGTTCCTTCGGATAAAGTGAGTTGGCTGATATGTTTACTGCAAGAGGCTTTGTGTAAAGAAAAGTAAGGAAGTGTCTTTATTTTTGTATTATTGTTATTATTATTATTATTTTGGCGTCGTTTCCCTCCCAGTATTCAGCCCTCGGTGAAACCCACTCGTTTAGCCGCTAGCAGTGATTCTCTCAGGCAGAATTCAGTATTTTGTTTCATACTGCCATCGTGAGGCGCTGTCAGGTATTGCCAGCCATATCGTCATCTATGCATCCTCTACAATTACCTTAGATTCACAGACCTGTTCTGAATCCTTACTAAATTTAGATTTAAAGTAATACTGCAGTGTTTTAACTGTGATTTAAGGTGAAAGTACCCATTGACTCTTTAGTTTAAGCAGGATGTTCAATCCGTGCTGTCCCCAAAATAGAGTGTCTGCAAAACAATTATTGTTTCCCCCCCCCCTATGTAAATACTTAATTTTTGCCAAAGATTTTATTTCACGTTTATATGCCTGAGTTTGAGATTTGATCACTGTCTGGTCGTATGCGAACGATGGCTTGTTGTTTTTGGCATGGGGGTCTGTTTTGACTCAATGCACATGCTATATGACGTGTTCAACTGTGTTTGGTTGCCATGATTCCCTTTTGTTTAGCCTTCAATACTACTCCAAAAGAATGCAAAGCACTTAATGATCAGGAGCTGAAAAATAGCAAAACATCAGATAAAAATGACTGCTTCAATAACAGCAACACCGTGTTTACACTGGAAGCGTCCAGCGGTTTGAGGTTGTCTACAACTGGAAGCTCCAGGCTACGCTTCAATCAAAATACAATCTGTGGAAAATAAAATCTTTTTTAAAATCCACTTTGCATGGGTTGTTTTATAATACCAACGTTCTTTTACTCACAATTGGCCTCGTTTATGAAAGTTATGCAGAATTTCTGTGTGCATGACTCGTAAGTCCACTCTTATGTCAACAGATGCATTTAATTCAGTTTACATAAGAATGAATTTACAGAATGCACAGTTAAATTGTCATGTTTCATGAATAAGACATTGAAACAAATGTGTACCGATGGTTAGATGGTTTAAACAGGTAGGCCATATACACCACAAGCTCACTTTGATGTAATGAAGATATTTAAATACATAATGAATTAAAGTCATAGCAATCAATTCACATTTATGATATTTGCAAGTAAAAAAAATCTGATTATAATCAACATAATTAAAGGTGCATCGAGTGAATTCTGAGAAACGTGGATCGGACCGAGCACCAAAACACACTTGTAGCCAATCAGCAGTAAGGGGTGTGTCCACTCATTGGGGGGGAGGTGCCAGTGTTGCATAGCAAAACATTTTGTGAATTTGGGGGCGTGGCTATCAAGATAGGAGTGTGATCCTTTTGGGTAGGGGCGTGTTTGTTTTGGTGATTTCAAATATCAACAACGTTTCTCAGAAATTGCTTACTGTACCTTTAAGTTACTGGTATGTAGAAAGTGTAGATGGTTGAGTTGATTAAAATGGGAGCCATCTACGTTTGTCGTACTGGACGTGTCTGGTGTAGACATGGTGTAAGAGTGATTATGCACACTAGAATCTATATATATGTATTTACTTGCTTTGCTTGCCTTTCTGGACATTTCATTTGGTGCATAGGCTTAGATAAACAACATTTGTTTTCCAAACAATATTTTCCAAACCACACAGAAATTGTTTTTGCATTTACCTGAAAATAGCTACGCAGTCAGACAAAGAGATCCTCCAACAAAATCAGCTCCCTACTCCTCCATGTATTAGTCAGCAGTGTTGTATTATTATATATATATATTTTTATGTCCACTTGTTAACAGACTTAGAATGTGTGAATGAGCTACTATTGCTGTACAGAACCACGTTGTTTCATTTGCTTCATGTTTTACAGCCTCATTGTATGGTTTTGGCAAAAAATATACATTAAAGAGCGATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU68723 True 3996 lncRNA 0.37 2 15311531 15320285

Neighbor

gene id symbol gene type direction distance location
CI01000009_15301177_15304489 NA coding downstream 7031 15301097 ~ 15304500 (-)
CI01000009_15229965_15235247 NA coding downstream 76003 15229657 ~ 15235528 (-)
CI01000009_14974529_14974816 NA coding downstream 336111 14974042 ~ 14975420 (-)
CI01000009_14961220_14973307 NA coding downstream 338126 14960980 ~ 14973405 (-)
CI01000009_14905408_14907785 NA coding downstream 403454 14904489 ~ 14908077 (-)
CI01000009_15483720_15484321 NA coding upstream 163424 15483709 ~ 15484321 (-)
CI01000009_15504401_15585060 NA coding upstream 184061 15503406 ~ 15585829 (-)
CI01000009_15654061_15662554 ARPC2 coding upstream 333475 15653760 ~ 15663026 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding upstream 372709 15692994 ~ 15694629 (-)
CI01000009_15716557_15721525 KLHL23 coding upstream 396192 15716477 ~ 15721596 (-)
G60430 NA non-coding downstream 18846 15292447 ~ 15292685 (-)
G60426 NA non-coding downstream 23137 15288178 ~ 15288394 (-)
G60422 NA non-coding downstream 26551 15284744 ~ 15284980 (-)
G60418 NA non-coding downstream 36419 15274789 ~ 15275112 (-)
G60384 NA non-coding downstream 94251 15217079 ~ 15217280 (-)
G60437 NA non-coding upstream 227876 15548161 ~ 15548460 (-)
G60439 NA non-coding upstream 229297 15549582 ~ 15549879 (-)
G60442 NA non-coding upstream 269372 15589657 ~ 15649377 (-)
G59941 NA other downstream 179028 15132104 ~ 15132503 (-)
G59811 NA other downstream 424067 14862397 ~ 14887464 (-)
G59490 NA other downstream 1273658 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 1332917 13975099 ~ 13978614 (-)
G59097 NA other downstream 3022013 12288217 ~ 12289518 (-)
CI01000009_15318811_15390382 TNS1 other upstream 55975 15318811 ~ 15390382 (-)

Expression


Co-expression Network