slc35f1 (slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858)


Basic Information

Item Value
gene id slc35f1
gene name slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48325885 ~ 48446366 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662051.1
ctctctctctctcAGAGCTCCTCCTCACTCTGGCTATGGGCCAGGTCCTGTCGCTGCTCATCTGCGGGATTGGCCTGACCAGCAAGTACTTGGCTACTGATTACCATGCCAACACTCCAGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTCCTGGTCTACACCACAACACTCGCAGTACGACAAGgAGAGGAAAACTTGCTGGCAATCTTGAAAAGACGATGGTGGAAGTACATGATCTTGGGCCTGATTGATATTGAGGCCAACTACCTGGTCATTAAAGCCTACCAGTACACCACTCTTACCAGTGTGCAGCTGCTGGACTGCTTCGTCATCCCTGTGGTTCTGCTGCTGTCCTGGTTCTTCTTGTTAGTGAGGTATAAGGTGGTGCACTTTGTGGGTGTGGGCATGTGCCTGCTGGGCATGGGCTGCATGGTGGGAGCTGACGTGCTGGTAGGAAGACAGCAGGGCTTGGGAGACCATAAGTTGCTGGGGGACCTGCTGGTTCTGGCCGGTGCTACGCTGTACGGCATCTCTAACGTGTGTGAGGAATTCATTGTGAAGAACTTGAGCCGTGTCGAGTTTCTGGGCATGATGGGCCTCTTCGGCTCCTTCTTCAGCGGCATCCAGCTAGCAATCATGGAGCACAAGGAGCTGCTGAAGGTGCAGTGGGACTGGCAAATAGGACTCCTGTACATCGGCTTCAGCGCCTGCATGTTTGGACTCTACAGCTTCATGCCTGTGGTCATCAAAAGGACGAGCGCAACTGCGGTGAACCTCTCCCTGCTGACCGCTGATCTCTACAGCCTCTTCTGTGGCCTGTTCCTGTTCCAGTACAAGTTTTCAGGGCTCTACCTGCTGTCCTTCTTCATCATTTTTCTCGGGCTGGTGCTCTACTCCTCATCTTCTACCTACGTGGCGCAGGATCCCCGGGTGTACAAACAGTTCCGTAACGCAGGAAATGCGGTACCAGACACGCCGAATGTGGGGCCCCTGGAGCCTTCAGTTACCTACAGCAGCCTCGGCCAGGAGATTGAGGACGAGCCTCGCATTCGAGTAGCCTGAAAGGGTGGAGCTTTACAGATTCAATCGTCCACTGCCCCTCACACAGTCTGTAGAATGTGAATGATGATTATCACTGAATGATGTATATAACCACGTAGCAAACAATTACACTGTGATCACAAACTGTGAATAGGTAGCAGTGATCAATGACTTTCTCAAACCCCTGTATAGACATGATGCCACCTCGTCTCCCCCTCCCCCAGCAACAGTTTAGGTGTTTAGAAGGATTTGTGCTGACTGTTCGTGCAAATGCGCCATTgtgattcttttattttcttatatgaGCACAAGAGGTTCAATGTATTTGAgatttttacatgtattttctTGCTACTCTCATTAATATTTTATGCCTCTGAGTTAATTCTCTCAATCTCTGTCTCCTGGACAACTGCAATTCTGACTTTTGATCAGTTACTTATTGATTTGCCAAGAGCCAGTGCCTTGCCATGTACAGCTATTGTTGTTTAAACAGTATAACTGATCACACCATATCTGATCACTTTGCCCCAAGTGTTGTCTGAGGACATCATTTTGTGAGAAAGTGCTGCATTCTGTGCTAAAACAAAAAGGATATTAACCATCCGAAGAACAAAcgtgaaacaaaacaaaataaaacaatgagtcTTTTTTATCTACTATGCTTAAACTATTCCACCAGTTGTCCCTGGTCGGTTATTCTTTTTTGAGTAGGCAAAGTTACTGATTGTCTTAgactgtatttgtttgtttttaatacatGAAAGTATATGacacttttgtttgtttaatgatGAAATGTGTATTAGCGATTGATTATAAACTTGTACAAAAAAGCaatgagaagagagaaaaaaagacgcTTGTCTTTACAGAGttctgttttaatttgttttatggCTGATCATCAGCTGCACTGTAGTCCTAAGTATTATcacatttggaaaaaaaaatctctgtataaagttattttgaacagattctttaaaaaaatcatttgacttttttatttgcCATTTAAATATTGGAATTCTTAATGTGTCCGAGTTGTCgctttaaataaagtatctttGTCTTAAAGCTGAAAA

Function

symbol description
slc35f1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1).

NR:

description
solute carrier family 35 member F1-like

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662051.1 True 2134 mRNA 0.44 8 48325885 48446366

Neighbor

gene id symbol gene type direction distance location
hsdl1 NA coding downstream 1186567 47134735 ~ 47139318 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding downstream 1191584 47129070 ~ 47134301 (-)
LOC103043748 LOC108424468 coding downstream 1197103 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 1201415 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 1224254 47096096 ~ 47101631 (-)
ppil4 ppil4 coding upstream 116138 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 276634 48723000 ~ 48735370 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding upstream 300534 48746900 ~ 48851645 (-)
bach2 bach2 coding upstream 463186 48909552 ~ 49075894 (-)
map3k7 map3k7 coding upstream 673596 49119962 ~ 49147483 (-)
G26953 NA non-coding downstream 66193 48259382 ~ 48259692 (-)
G26944 NA non-coding downstream 110627 48212095 ~ 48215258 (-)
G26888 NA non-coding downstream 436539 47887751 ~ 47889346 (-)
G26868 NA non-coding downstream 628305 47697381 ~ 47697580 (-)
G26863 NA non-coding downstream 644124 47681169 ~ 47681761 (-)
G27029 NA non-coding upstream 105870 48552236 ~ 48552562 (-)
G27030 NA non-coding upstream 106466 48552832 ~ 48553160 (-)
G27035 LOC108427529 non-coding upstream 139681 48586047 ~ 48694424 (-)
G27046 NA non-coding upstream 188082 48634448 ~ 48634837 (-)
G27062 NA non-coding upstream 229387 48675753 ~ 48676840 (-)
LOC103039734 LOC108424428 other downstream 1223 48217506 ~ 48324662 (-)
pln NA other downstream 37149 48278262 ~ 48288736 (-)
G26754 NA other downstream 1587149 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 1790050 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 1799889 46518871 ~ 46525996 (-)
G27145 NA other upstream 440628 48886994 ~ 48891028 (-)
G27258 NA other upstream 1192393 49638759 ~ 49639444 (-)
G27400 NA other upstream 2035523 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 2076533 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 2278697 50725063 ~ 50740434 (-)

Expression


Co-expression Network