amd1 (amd1)


Basic Information

Item Value
gene id amd1
gene name amd1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48541535 ~ 48565601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662058.1
GTTCGGTGTGAACGTACAGTTACACAGTATGGccggcgatattagctagcactCGCTCACGGTGTTCTCTGTAAAAGGGGAAGACggtaaaaatcatttaaagcatCCCAAGAAATCAACACCCGGACTGCTCAAGGACTGTACCAAGATCTCTATAAGTTATCTACCCAGCAAAAAGGACTTTAATAAGCTAGACCCGAGctaggtttatttttttttttattttttttttctgttgttggtGTCTTGTTTGTCTCACGATGGAGGACAACGGTGCACACTTCTTTGAGGGGACCGAGAAGCTGCTGGAGGTGTGGTTCTCCCGGCAGGACGAGACCAAAGGAACCGGGGACCTCCGCACCATCCCGAGGTTTGAGTGGGACAAACTTCTGGAGAATGTGCATTGTTTGATCATAAGTGTGACAAAGACTGACAAGCAGGAAGCTTATATACTCAGtGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGTGGAACCACCCTCTTACTGCAAGCGCTGGTGCCCCTGCTGGAACTGGCGCGGGAATATTCCGGCTTCGACACCATCGAGAACTTCTTCTACTCTCGTAAGAACTTCATGAAGCCCACCCATCAGGAGTTCCCTCACCGCAACTTTGAGGAGGAAGTGGAATTTCTCAGCCAGATTTTCCCGAATGGAGCAGCATACTGTATGGGCCGTCTGAACTCCGACTGCTGGTACTTGTTTACTCTGGAGCTGCCAGAGTACTGGGAGAACAAGCAGGCGGACCAGACGCTTGAGGTTCTGATGAGTGATCTCGACCCAGCCGTGATGGACCAGTTCTACATGAAAGACGGTGTTTCCGCTAATGATGTCACTCGTATGAGTGGAATTCGTGACCTGATTCCAGGTTCTGTGATCGACGCCACAATGTTCAACCCTTGTGGATACTCCATGAATGGAATGAAAACAGATGGAACTTACTGGACAATTCACATCACCCCTGAACCAGAGTTCTCCTATGTTAGTTTCGAAACTAACCTCTCCCCAAACATCCTACGATGATCTTGTCCGGAAAGTCGTGGATGTCTTCAAGCCAGGGAAATTTGTGACTACGCTTTTTGTTAATCAGagctccaggtgtc

Function

symbol description
amd1 Predicted to enable adenosylmethionine decarboxylase activity. Predicted to be involved in spermidine biosynthetic process and spermine biosynthetic process. Predicted to act upstream of or within polyamine biosynthetic process. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human AMD1 (adenosylmethionine decarboxylase 1).

NR:

description
PREDICTED: S-adenosylmethionine decarboxylase proenzyme

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0008295 spermidine biosynthetic process biological_process
GO:0006557 S-adenosylmethioninamine biosynthetic process biological_process
GO:0004014 adenosylmethionine decarboxylase activity molecular_function

KEGG:

id description
K01611 speD, AMD1; S-adenosylmethionine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662058.1 True 1138 mRNA 0.48 9 48541535 48565601

Neighbor

gene id symbol gene type direction distance location
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 229995 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 322191 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 344996 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 615133 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 951119 47393247 ~ 47590416 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 55129 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 84087 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 106486 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 124523 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 134012 48699613 ~ 48707949 (+)
G26982 NA non-coding upstream 91079 48418832 ~ 48450456 (+)
G26910 NA non-coding upstream 328553 48212137 ~ 48212982 (+)
G26890 NA non-coding upstream 609584 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 788669 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 843955 47697342 ~ 47697580 (+)
G27008 NA non-coding downstream 68843 48634444 ~ 48634842 (+)
LOC111188407 NA non-coding downstream 99054 48664655 ~ 48668564 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 157730 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 199888 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 288911 48854512 ~ 48874216 (+)
G26915 NA other upstream 225641 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1991982 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5047219 43490323 ~ 43494316 (+)
G25880 NA other upstream 5116629 43424392 ~ 43424906 (+)
G25879 NA other upstream 5119489 43421771 ~ 43422046 (+)
LOC103035773 NA other downstream 13202 48578803 ~ 48618075 (+)
G27075 NA other downstream 175613 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 882244 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1773963 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2179282 50744883 ~ 50753961 (+)

Expression


Co-expression Network