LOC103045300


Basic Information

Item Value
gene id LOC103045300
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51465284 ~ 51481876 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662381.1
aagAGCTAAAATCCAGATCATTACTGCATTGCTTCAGTTGAAATGCTGCTGACAGGAGGTTTGGCCTGCTTTGTCCTAGAGCTAAATTTCCCAAGCAGTAAAACCCTCCCTCCCTACTCTCCATTCCTTCATACAGACCTGCCCCAACTCTcaaccctctcacacacaccgtTCACTCTGCGTCTTTTCTGGAGTAGTGTGTTCACTAGTATGTTTACGTCAAGGATTTTGACTTTTTCTGGGTCATCTTGTGCTTGGGATATTGGATTATGTCATGCTGACATGACTGAAGCTACCACCGTTAGTAGAGGTCTGGGGTTTAGGCCGGGCCTGGTAAAGAGAACTGCTGCTGGTTCGAGGCTTGATATGGGACTAGCTGTAGCGGTTGGTTCATCACCAGCCACTTCCTTCATGAGTCACACTATCAGACTCAGAAGTGAAATGATGACCTCGTTACCTGGATCTACCTCAGGGCTTGATGATGGTGGCTTTGGTCTGTTCCGCTTTGAACCAATGGAAGAAATCAAATCCAGAGTGAGAGAATTGCAGGAGGAAAGCAAAGCTCTGGAGGCCAGACTGGCAGAGCTAACTGGAGGAGTGGATAGCACAGCTATGGAGACTGATGCTGTGGTGAACATAGAGGAACAACAGCAAGTCCAGGTCCAGGGGGAGTACTGTAAGGAGTTGGAGCATCTGGCTTTGGACACAATCAGACTTCACAGAATGCTAAACAACATTAGATCAACTGCACTTGAGCTAAAGGCCCAATATGATATTAAACAGGAATTTAGAGTGCTACTGGAAGCTGACATTGCTGCTATGAAGAAGGAAATTATGATGACTTCAAGATTGCAGTTGAATTTACAGACTAAGAAAGCAAGACTAAGGGATGAACTGTATTTCATTAACATAATCCAGCATGAGATGCAATACAGGCAGCATGACTTTTGGGGACCTCACGTGACTCTACTGGGGCCTACTGAAAGTGAGATCACAGCTTGCAAGATGAAACTGCAGGCCCTTCTCATACAGTTACACAACCTTACTGGCGTGAACCAAagtttaaacagaactctgGCAAGAACTCACTTTCAGGCAAACTATGTAATTTCACGATACCAGGCCCAGATTGCCATACTAGAAGCAGCCATTGAGGCAGCTAAAAGTGAACTTCAGGAACACATCATTACCCATAAAGAGGTGCAGGACTTGATGCAGGCTCTGGGTGCTGAAACTGCAACCTACTGGGCACTTTTGGATGGTGAGGAGCTAAGCGCCTCGATACAGATCAACCGCACTTCATCCTCAATGAACCTATCGGAGTCTGTGCCCGACTCTAACAGAACCTCCTCCCCTCTTAATACTGTCCAGACTGACATCGCTGCAGAGGCCCAACCTGAGGAAACAGAGAGcaTTACAGCCAACGAGTGACCGCAGTAAACAACATCAACAGGTGAGACTCCCCTGGGGAAGCTAGGTGGCTACTGGGGCCTCCCCATGTGTACAGTACAATAGTGCTTTCATTctgttaacattttaataaaaaaaacacacacacatatgttcaGTGAGGCCATGTTTGTGACAGTTTTACCAagcctttgttttttgtttctcattaaaattgtaaaagcaataaaatatgcaaaaaaacaattttccCCTATTTTATTTCCGCAgagcatatcgtcgctgtccaatgaaaaacacttatctccaaaacaccaactttacagg
>XM_022662384.1
aagAGCTAAAATCCAGATCATTACTGCATTGCTTCAGTTGAAATGCTGCTGACAGGAGGTTTGGCCTGCTTTGTCCTAGAGCTAAATTTCCCAAGCAGTAAAACCCTCCCTCCCTACTCTCCATTCCTTCATACAGACCTGCCCCAACTCTcaaccctctcacacacaccgtTCACTCTGCGTCTTTTCTGGAGTAGTGTGTTCACTAGTATGTTTACGTCAAGGATTTTGACTTTTTCTGGGTCATCTTGTGCTTGGGATATTGGATTATGTCATGCTGACATGACTGAAGCTACCACCGTTAGTAGAGGTCTGGGGTTTAGGCCGGGCCTGGTAAAGAGAACTGCTGCTGGTTCGAGGCTTGATATGGGACTAGCTGTAGCGGTTGGTTCATCACCAGCCACTTCCTTCATGAGTCACACTATCAGACTCAGAAGTGAAATGATGACCTCGTTACCTGGATCTACCTCAGGGCTTGATGATGGTGGCTTTGGTCTGTTCCGCTTTGAACCAATGGAAGAAATCAAATCCAGAGTGAGAGAATTGCAGGAGGAAAGCAAAGCTCTGGAGGCCAGACTGGCAGAGCTAACTGGAGGAGTGGATAGCACAGCTATGGAGACTGATGCTGTGGTGAACATAGAGGAACAACAGCAAGTCCAGGTCCAGGGGGAGTACTGTAAGGAGTTGGAGCATCTGGCTTTGGACACAATCAGACTTCACAGAATGCTAAACAACATTAGATCAACTGCACTTGAGCTAAAGGCCCAATATGATATTAAACAGGAATTTAGAGTGCTACTGGAAGCTGACATTGCTGCTATGAAGAAGGAAATTATGATGACTTCAAGATTGCAGTTGAATTTACAGACTAAGAAAGCAAGACTAAGGGATGAACTGTATTTCATTAACATAATCCAGCATGAGATGCAATACAGGCAGCATGACTTTTGGGGACCTCACGTGACTCTACTGGGGCCTACTGAAAGTGAGATCACAGCTTGCAAGATGAAACTGCAGGCCCTTCTCATACAGTTACACAACCTTACTGGCGTGAACCAAagtttaaacagaactctgGCAAGAACTCACTTTCAGGCAAACTATGTAATTTCACGATACCAGGCCCAGATTGCCATACTAGAAGCAGCCATTGAGGCAGCTAAAAGTGAACTTCAGGAACACATCATTACCCATAAAGAGGTGCAGGACTTGATGCAGGCTCTGGGTGCTGAAACTGCAACCTACTGGGCACTTTTGGATGGTGAGGAGCTAAGCGCCTCGATACAGATCAACCGCACTTCATCCTCAATGAACCTATCGGAGTCTGTGCCCGACTCTAACAGAACCTCCTCCCCTCTTAATACTGTCCAGACTGACATCGCTGCAGAGGCCCAACCTGAGGAAACAGAGAGcaTTACAGCCAACGAGTGACCGCAGTAAACAACATCAACAGagcatatcgtcgctgtccaatgaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662381.1 True 1737 mRNA 0.45 7 51465284 51481876
XM_022662384.1 False 1478 mRNA 0.47 8 51465316 51481876

Neighbor

gene id symbol gene type direction distance location
LOC103038926 NA coding downstream 5201 51455657 ~ 51460083 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 43892 51245789 ~ 51421392 (-)
pnrc1 NA coding downstream 286933 51174484 ~ 51178351 (-)
pm20d2 pm20d2 coding downstream 290894 51149463 ~ 51174390 (-)
ankrd6 ankrd6 coding downstream 609969 50779334 ~ 50855315 (-)
lztfl1 lztfl1,LOC107701792 coding upstream 2892 51484768 ~ 51495272 (-)
LOC103029105 NA coding upstream 783172 52265048 ~ 52272380 (-)
cgrrf1 NA coding upstream 892640 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 956581 52438457 ~ 52445807 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding upstream 969427 52451303 ~ 52456147 (-)
G27523 NA non-coding downstream 280042 51184728 ~ 51185242 (-)
G27504 NA non-coding downstream 421077 51039630 ~ 51044207 (-)
G27502 LOC108427479,LOC103380695 non-coding downstream 433983 51029156 ~ 51031301 (-)
G27461 NA non-coding downstream 492628 50954618 ~ 50972656 (-)
G27454 NA non-coding downstream 579388 50885531 ~ 50885896 (-)
G27619 NA non-coding upstream 279048 51760924 ~ 51761490 (-)
G27621 NA non-coding upstream 304186 51786062 ~ 51789157 (-)
G27623 NA non-coding upstream 361058 51842934 ~ 51844943 (-)
G27626 NA non-coding upstream 417671 51899547 ~ 51900123 (-)
G27628 NA non-coding upstream 424211 51906087 ~ 51906467 (-)
pcmt1 pcmt1 other downstream 724850 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 925612 50522899 ~ 50539672 (-)
G27400 NA other downstream 933645 50481889 ~ 50531639 (-)
G27258 NA other downstream 1825840 49638759 ~ 49639444 (-)
G27145 NA other downstream 2574256 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 812004 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 1304596 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 2140195 53622071 ~ 53622358 (-)
akap7 NA other upstream 2261004 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 2567919 54049795 ~ 54055697 (-)

Expression


Co-expression Network