ube2j1 (ube2j1)


Basic Information

Item Value
gene id ube2j1
gene name ube2j1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50896361 ~ 50972664 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662442.1
TGGTTCAATCAGGCTGAGTTTGTTTCGTTTTTCAGGGACTTTTTGGTGCTCTGTGTGGTTTCAGTCTGCCCACTGAAAACACACGAGCAGAAACACTTCGCCACGTCAGTTCTGGCTCTGGTTCGGGCGCTGACAGCTGCCGGAGTGAACGGGTTTACGGAGCACACAGGCTAAAACAGCCCCACAACAAACCCGGATCCACACCGGCTGCGTTGCTTAGCAGCAAGTTTTAGCCGGCTAACGCTGGACCTGTGAAGAACAACaacaagcagaagaagaaagagaaggaatAGCAGGAAACACTCTGACATCTGGGGAAAGATGGAGAACAAATACAACCTCAAGAGCCCAGCTGTGAAAAGGTTGATGAAGGAGGCAGCCGAGCTCAGAGACCCCACCGAACACTATCATGCCCAGCCTCTCGAGGACAACCTCTTTGAGTGGCACTTCTCTGTCCGTGGGCCTCCAGACTCGGATTTCGATGGAGGGATTTATCACGGGCGCATCGTTCTTCCTCCTGAGTATCCCATGAAGCCCCCCAGCATCATTCTGCTCACTCCCAACGGGCGTTTTGAAGTGGGGAAGAAGATCTGCCTGAGCATATCTGGGCATCACCCTGAGACCTGGCAGCCCTCCTGGAGCATTCGGACAGCATTAATAGCAATCATAGGGTTCATGCCAACTAAAGGAGAGGGGGCAATAGGATCACTTGATTACACCCCagaggagaggagagccctCGCCAAAAAgtcttTGGATTTCTGCTGTGAAATGTGTGGATGCTGCATGCGTTCAGCCCTTCTGGCGCTCTCTCCTAACAGCGACCGCCAACCAGCTGACCAGCAGGCTCAGCAGCTAGCCCAGCAGATTAGCTTTAAGgCCGAGTCAAGCACATCAGCTGTGGCTAGTGGAAGTAATGTGTCTCAGAGTGTCCAAAGAACTGACCAACAGGAAGAGAGCTCCACATCAGAGGTGAAGGAGGACAGTGAAATAACAGCACAAGCTGAACAGGTTGAGTCCAGTTCTGAAGCCTCCTCAGAAGCAGCACCAGTACCTCCAGCCCCTGCCTCTCGACCCCTGAGCCCCCGGCAACGCCGCGCTCAGAACCAGATCCggaaccagaaccagaatcaGAACCAGGTCCGCAGGCCCGCCTTCCCAGCATTCCCTGCAGCAGCGGCTCAGCCGGACGGCAGCCACACGGGCTCGGCCGTGCTCATCGTTCTACTTACACTCGCCCTGGCGGCACTCGTCTTCCGCAGGATCTACCTGGCCCAGGAGTACAAGTTCGACTACGAGCTCTGACTGACCCCCACTTTTAAATCCACTTTAACTGCCACCAACATCCACCACCATCCAGCCCGGCACTCAGCCTGCCTCTCTCAGCCCAGCCAGAGCTCTCTCTCCATAGGCATGGATCCTCTCAGTATGCCCCTCTGCCAGCCTGACAGACTGAGAGACCATGGTTCTTCATCAGGGCACAAGTTACTTAAAAAATCCAGAAGAAAGGGACTGGTTTCTGTATTATTGGCCTCTGTGCATTCCTTTAAGGAAGGATGAATAATGATCcaattcttttcttttcttcttttcttttttatttttttgggtggATGGATTCAGTTTTTTAaactacactcttaaaaataaaggtgccaaaGAAGGATTATTTGAACTACCTACTTTTGGTTTCCTCaagaaatttaaatgaattgttctttaaagtaaaataaagtaaagaacctttttaaacattaaagaaCATCCCCGTAATGTACAGCTTCCATGCTTTTACTATAACCTTCACCTCCAAATCAGAATCTGTTCAAgatcctttatttttaagattgtAGACCTTTTTCCTCGTCTATTGGTTTCTTAAGAATGGTTATGTCGTTATATTGAGCCGTGAACATAAGGGACTATAAAGCctctaagggtgttttcacacctatgGTTCATTTCTCTGGTCAGAATCAGTATCATTTAATGACTTTATAAACTTGGAGCATTTTcccccttggtttggtttggtcatAGACAAGGAAAACCGCAAGTGCAACAAAATGGGTCACAACAAATGTATCTGTTAGTGGGTCAGAGCTCTGTGGGATGGGAGCAAGAaattaaatacaggaagaagccTGTGTTCTGGATTAGCTCATGGCAGAAATGGCATTAGTAAATAGTTGTTGTAAATGTCTaggtaataaatcagattaaactgcacctgaacagccatttagcTCAAACATGAGGAGTGCTGATATAGTTTAAAGTACTGTGATATTTTGGTTGTGTTGAAGTCTGATCACTTACTCACCATGAACAAATCACTCTGGAGTTCTTTGGGACCAGACCGAGACCACATCATCATCTCAGGAGTCTTGGTACGGTTATTTTGGTCCTCATGCGAGTGCAATTACAGTATTTGCACCAGCCAAAATAAACCTCACTAAGGGTGAATACAAACCAGAGTCTGATTTACCAGACAGTATATgtgtaaaaacaccctaaagGCTTCTGATGCATGTGCTTTTGGTctgaaaaaagtataaaactgTAATAGGCTCTAGCAAATGTTCAGCATAATGATTACTCGATTAAGATTCAATCGATTCTAATCTAATGTCAGCAGTTAAATTAGATTTAGACACTATGGTATAGAGCATAATGCATTTAAACtttcaagaacacacacacacacacattctcgcTGTCCTCACCACCTGAACTTAGCTGGGCTGTTCTATTCCAAGTCAAGTTCAAAACAGAGCCTGTCGGTTTAGGATTAGTGCTTTTAATGGTGACCCAAGTCCTAGTCTAGTGACCCTgaaaaaagctcagtttaatCTATAACTCAATTGTGCAATGTAAAGCTGTTGTGTAATTTTAACAAGAGAGAATGATTAAAAATGGAGAACAAGA

Function

symbol description
ube2j1 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human UBE2J1 (ubiquitin conjugating enzyme E2 J1).

NR:

description
ubiquitin-conjugating enzyme E2 J1

GO: NA

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662442.1 True 2928 mRNA 0.46 8 50896361 50972664

Neighbor

gene id symbol gene type direction distance location
lats1 lats1,LOC107660506 coding upstream 128122 50758025 ~ 50768239 (+)
lrp11 lrp11 coding upstream 172429 50706249 ~ 50723932 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding upstream 380417 50512953 ~ 50515944 (+)
LOC111191919 NA coding upstream 1562439 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 1996127 48897216 ~ 48900234 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 7851 50980515 ~ 51030792 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding downstream 111404 51084068 ~ 51145395 (+)
rngtt rngtt coding downstream 220159 51192823 ~ 51222073 (+)
dnajc13 dnajc13 coding downstream 530556 51503220 ~ 51584097 (+)
tmx3 tmx3 coding downstream 613543 51586207 ~ 51695017 (+)
G27370 NA non-coding upstream 193240 50702371 ~ 50703121 (+)
G27369 NA non-coding upstream 220865 50674557 ~ 50675496 (+)
G27333 NA non-coding upstream 346379 50546608 ~ 50549982 (+)
G27322 NA non-coding upstream 477581 50362734 ~ 50418780 (+)
G27463 NA non-coding downstream 273 50972937 ~ 50973244 (+)
G27481 NA non-coding downstream 189961 51162625 ~ 51167564 (+)
G27491 NA non-coding downstream 215199 51187863 ~ 51188330 (+)
G27494 NA non-coding downstream 254428 51227092 ~ 51227330 (+)
G27495 NA non-coding downstream 254758 51227422 ~ 51227631 (+)
lyrm2 lyrm2 other upstream 124199 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 142400 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 487791 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1448140 49447845 ~ 49448221 (+)
G27075 NA other upstream 2153922 48741214 ~ 48742439 (+)
G27489 NA other downstream 201824 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 1110618 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1341361 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 1481767 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 1787449 52760113 ~ 52768976 (+)

Expression


Co-expression Network