rngtt (rngtt)


Basic Information

Item Value
gene id rngtt
gene name rngtt
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51192823 ~ 51222073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662454.1
CCATTCACTACTTTGTAGTTTGTGTGACAGCTCTGTGAGCGGGCGCTGCGTGGATATTTGGTCATTTTTGGCTTCAGTCCGAAACCGAGGGGGACGTTTCTGTGAGCGGGGCCTGCGGGCTGAGACCGGGCCAGCGAGTCTGATTCAGAGGCCGAGGCAGCGAGCAGCGGGTCAGCCCGGGACCAGAAGCCCGCCTTGGAGGGCTCCACTCTGGGGGAGCCAGCGGCTGATGCTGCGCTAGTTCACTGTTCTGAACACAGTTTACTGGAAAACAACAGCCAGAGACCATGTCACACACAGGACCACCCCCTCGATGGAGGAACTGCCCTAGGAGAGGACAACCTGTGGCTGGTAAATTCTTACCAATGAAAACAATGTTGGGTCCCAGGTATGACGACTCAGTTCCAGAGGAGAACAGGTTCCACCCAAGTATGCTGTCCAACTATCTTAAAAGTCTGAAGGTGAAGATGGGTTTGCTTGTTGATTTGACGAATACCACACGCTTTTATGATCGTGCAGAGATTGAAAAAGAAGGGGTCAAATATGTGAAGCTTCAGTGCAAAGGTCATGGGGAATGTCCCACTGCAGAGACGACGGGGATGTTCATCAGGTTATGTGAGCACTTCATGCAAAAGAATCCTACTGAACTCATTGGTGTCCACTGTACCCACGGCTTCAATCGGACAGGCTTTTTGATCTGCGCCTACCTAGTGGAGAAAATGGACTGGAGCATTGAGGCAGCCGTGGCGGCGTTTGCCCAGGCCCGCTCTCCTGGCATCTACAAAGGAGACTACCTGAAAGAGCTCTTTCGTCGATATGGTGACGTAGATGACACGCCCGCTCCTCCCCAGCTCCCTGACTGGTGCTTTGAAGATGACAATGACGGTGATGTTGATGATGACGGGAATGTAATTAGTCAGGAGTCTGGACCGAGCTCGTCAGGCTCCAACCCAggcaagaagaagaaagagaaactaaaacTGGGGGCTGTATTCCTGGAGGGTGTGTCGGTCAAAGGAGTGAATCAGGTGACTACGCAGCCTAAGCTGGGACAGGTGCAGAGGAAATGCCAGGAGTTCTGCGAGTGGCAAAAGTCTGGGTTCCCTGGCGCTCAGCCTGTGTCTATGGACAGGCAGAACATTCGTCTGATGGAGCAGAATGGCTACAAGGTTAGCTGGAAGGCAGATGGAACACGGTGAGCtcaatattacacacacacacacccatgtcACCTCCTGCTCTCTGAGCAGTCCTGCACATGCTGTCCTTCGTGAGGTCCATACGCACACCAGCCAGCGTCTGTTACAGCCTGTAGTTGCTGTGGAAAGAGCACTGTGGAACACAGCATTCCTATTTGAAATCGGATCAGCAGAGTTTGCCTGTTCTCCCATCTGTGTCCGGGATCAAGCCTGTCTCTATTACAGCCTCTGCAAGATTTTGTGATGTCTCTTTCAGTATCTCATGCGGA

Function

symbol description
rngtt Predicted to enable mRNA guanylyltransferase activity and triphosphatase activity. Predicted to be involved in 7-methylguanosine mRNA capping. Predicted to act upstream of or within dephosphorylation and mRNA processing. Predicted to be located in nucleus. Orthologous to human RNGTT (RNA guanylyltransferase and 5'-phosphatase).

NR:

description
mRNA-capping enzyme

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0098507 polynucleotide 5' dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004651 polynucleotide 5'-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K13917 RNGTT; mRNA-capping enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662454.1 True 1468 mRNA 0.52 8 51192823 51222073

Neighbor

gene id symbol gene type direction distance location
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 47428 51084068 ~ 51145395 (+)
LOC103030377 LOC108427479,LOC108256881 coding upstream 162031 50980515 ~ 51030792 (+)
ube2j1 ube2j1 coding upstream 220159 50896361 ~ 50972664 (+)
lats1 lats1,LOC107660506 coding upstream 424584 50758025 ~ 50768239 (+)
lrp11 lrp11 coding upstream 468891 50706249 ~ 50723932 (+)
dnajc13 dnajc13 coding downstream 281147 51503220 ~ 51584097 (+)
tmx3 tmx3 coding downstream 364134 51586207 ~ 51695017 (+)
LOC103029411 NA coding downstream 1099919 52321992 ~ 52327802 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 1145810 52367883 ~ 52374147 (+)
ddhd1 NA coding downstream 1160872 52382945 ~ 52400818 (+)
G27491 NA non-coding upstream 4493 51187863 ~ 51188330 (+)
G27481 NA non-coding upstream 25259 51162625 ~ 51167564 (+)
G27463 NA non-coding upstream 219579 50972937 ~ 50973244 (+)
G27370 NA non-coding upstream 489702 50702371 ~ 50703121 (+)
G27369 NA non-coding upstream 517327 50674557 ~ 50675496 (+)
G27494 NA non-coding downstream 5019 51227092 ~ 51227330 (+)
G27495 NA non-coding downstream 5349 51227422 ~ 51227631 (+)
G27563 NA non-coding downstream 257253 51479326 ~ 51535896 (+)
G27633 NA non-coding downstream 785841 52007914 ~ 52008225 (+)
G27643 NA non-coding downstream 868780 52090853 ~ 52092447 (+)
G27489 NA other upstream 14449 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 420661 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 438862 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 784253 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1744602 49447845 ~ 49448221 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 861209 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1091952 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 1232358 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 1538040 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 2400750 53622823 ~ 53622894 (+)

Expression


Co-expression Network