LOC111188773 (LOC108417958)


Basic Information

Item Value
gene id LOC111188773
gene name LOC108417958
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52811053 ~ 52816494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662560.1
GGAattgattaatatttaaaaggaTCAAAATCACTCAGTTCTTCAGTTCTGTTTAGTCACTCTCTCTGCAGCTGAGGAGACACTGGCTACAAAATGTGGGGAAGGCTGTACAGCTGTTTCCTGGTTTCTCTCCTGTTGATGGTGGTCTGGGCTGCCCCCCAGAAAGACCACGATCATTCAGAAGACCACCATCAACATCTCCACCATGGTAAGGATGAACCTCACCCCAGCCACGAAGGAGTAGATAATTTATGCCACAGACTCTCCCCCCACAACGCCGACTTCGCCTTCTCCCTCTACAAGAAGCTCTCCACCCACCCTGAAGCCAAAGGCAAGAAGAACATCTTCTTCTCTCCACTGAGCATCTCCATGGCTCTGTCCATGCTGGCTCTGGGGGCTAAAGGTAACACCCACTCTCAGATCTTCAGCACCCTGGGCTACAGCACCCTCACTCCTGATCAGGTTAATGAAGGGTACGAGCACCTGCTCCACATGCTGGGACACAGTCAGGACGCCATGCAGCTGGAGGCAGGAAGTGCTGTGGCTGTCCGAGAAGGCTTTAAACCCGTTGACAAGTTTCTGAAAGATGTTCAGCATTTCTACCAAGGTGAGGCCTTCACTGTGGACTACTCCAAACCTGAAGTCGCTGTTcaagaaataaacaagtacATCGCCAAAAAGACCAAGGACATGATCACTGACATGATCGAGACCCTGGACCAGCAGACTGTGATGATGCTCATCAACTACATCTATTTCAAAGGTAAATGGGAGGAACCTTTTGAAGCACACCTCACCCGTAAAGCCGACTTCAACGTAGATGAAAACACCAAGGTGTCTGTGGACATGATGAAGAGAACCGACCAATTTGACTTCTACCGTGACCAAGAAAACTCTACCTCCATCATCAGGGTGCCCTACACAGGCAACACCTCCATGATGATCATCCTTCCTGATGAGGGAAAGATGGAAGAGCTGGAGAAACAAATCAGCAGGGACCATTTCAAGAACTGGCGAGAAAAACTGTCTAAGAGttctgtGAGTCTGAGTATGCCCAGGTTCTCAATATCTGCCTTCATCAGTCTTCACCAGACTTTGCAGGAAATGGGAATTACTGATGCATTTTCAGAAGACGCTGACTTGTCTGGACTCAGTGAGAACAGCAAACTGAAGATTTCCAAGGTCCTCCATAAGGCAGTGCTTAAAGTAAATGAGGAAGGCACTGAAGCAGCTGCTGCCACCGCTGTAGAGATTGTGTTGACATCATTTCAAATCTCTGAAATCATGGTTCTCAACAGACCATTCCTGGTGTTTATTTTGGATTCCAGCACCAGGAGCATCCTCTTCATGGGCAAGATCAACAACCCCACTGAGTAAAAGCTGCTGAATATCCATCAAATGTTACGTATCAGGCAGATGTAAAAATGTTGCATCCATTATAAGGCTGTTTCTCTTTTGTTGGCatattaaatcaataaataaacaaactctaaaatgcaa

Function

NR:

description
PREDICTED: alpha-1-antitrypsin homolog, partial

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662560.1 True 1500 mRNA 0.47 5 52811053 52816494

Neighbor

gene id symbol gene type direction distance location
LOC103033541 LOC108413844,LOC108417958 coding upstream 21684 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 29189 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 201232 52574938 ~ 52609821 (+)
trnac-gca_8 NA coding upstream 342210 52468772 ~ 52468843 (+)
LOC103030894 NA coding upstream 398973 52403882 ~ 52412080 (+)
LOC103041583 LOC108417958 coding downstream 8690 52825184 ~ 52829284 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 1147068 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 1450890 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 1617229 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 1848914 54665408 ~ 54689752 (+)
G27772 NA non-coding upstream 117697 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding upstream 138939 52667335 ~ 52672114 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding upstream 280053 52528728 ~ 52531000 (+)
G27716 NA non-coding upstream 430048 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 446881 52362005 ~ 52364172 (+)
G27834 NA non-coding downstream 87826 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 213315 53029809 ~ 53030010 (+)
G27873 NA non-coding downstream 487434 53303928 ~ 53304405 (+)
G27875 NA non-coding downstream 511378 53327872 ~ 53330777 (+)
G27903 NA non-coding downstream 682981 53499475 ~ 53504424 (+)
LOC111188765 glrx5,LOC106571612 other upstream 42077 52760113 ~ 52768976 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other upstream 354889 52454431 ~ 52456164 (+)
G27683 LOC108412685 other upstream 496787 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 720420 52083282 ~ 52090633 (+)
G27489 NA other upstream 1632679 51174488 ~ 51178374 (+)
trnah-gug NA other downstream 806329 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 806688 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 806955 53623449 ~ 53623521 (+)
trnam-cau_5 NA other downstream 807123 53623617 ~ 53623689 (+)
trnah-gug_1 NA other downstream 807574 53624068 ~ 53624139 (+)

Expression


Co-expression Network