rfx6 (rfx6,LOC107678847,LOC104962418)


Basic Information

Item Value
gene id rfx6
gene name rfx6,LOC107678847,LOC104962418
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54815778 ~ 54826525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022662838.1
gtaaaataaaaaagcaaacagGACATCTCCTCGACTATTTATAACCCCATCCCCACGCCATATTCATTAACGGAAAAAGGCCATCATAGCAACATTAATGACAACATGTAATTTGAGTGGTGGGCCATTctcagcaaagcaatgatatCAACATGGCTTGGTAAAGTCATTCTCTTACCCTGTTTAGTAGTTTCTAATCACATATGATCTTTTTTGGTGGACTCTCAAGCTAGTGGTGACccttaaatgcaaaaaaaaaaaaaaaaacagtagaaggGGATAAAATCAGTAACCACAAACATACAAAGTGCATCTATATGGTAAAAactttcagataaaaaaaaaatatagtgcTAAGGATATAAGGATGTGCATGATCTTGCTGCCCTAGCCCTGCTGAAAGCAGGCACTGCAGAATGAAGGCTCTGGATGGGGCTATAGTCCAGTGGAAAGGCCACAGAACAGGTTTGATGGAGACGATGGCCCCTCGGGTTAATCATTAATACACAGAATCTACTGCCAGTCTTCTGTAAATAAGATAAATGCCCCCAAGGCACTCACCTCAGTGACGTACTATTTCAGACACAGCACAGCTTTAATTAAGACAGGAAGGTGTAACGTATTTCAGCGGCTTGATGTTTGGATGTGGACAAAATGATTCTTTCTAAATTTCAGTTTGAATATTAGTGTAAAGGATGTTTGTGTACACTGTTTCATTTTGGTGTTAGTGATTTTTTTCTCCAGAACCTGAGATGTGCACCATTACAGTACTGGACCAATGCATCAAACTGGAGtctcttttttaaagtgtttattgaaaatatcTGAAACGGAGGAATACTGAGTGTGTCCACAGCTCATCTTTTTGAATGAACCTGGTAACATCTCAATGAAAAGGAATAGTGGAAGTTCTGTGGAGAATAACATGTTTCATCAGCTTCAGCCACCACAGCCAAAGAGGACTTACAGTAATGCTGATGATTTCCACCCAGCAAACTCCAGTGAGCAGCAAGACCTtagaaaaaacatgtttttcaaaGAAACGtttgaggaagaggaggaggattcAGGAATTAAATCAGAGGCAGAGGAAAGCAATGGAACCATATCCTCTGAAGATGACTTAGACCACCTTGAATACTCAAAGAACATTGCTCTGAAGCAAAGTGTCGAAAAGAAAAGCATCAGTCAAATCATCAAAGACAAGAAGAAACAGACCCAACTAACATTATTGTGGCTTGAGGAAAACTATATAGTTTGTGAAGGTGTGTGCTTGCCTCGCTGTATCCTCTACGCTCATTACCTGGACTTCTGTCGGAAGGAGAAGCTAGATCCTGCTTGTGCCGCCACTTTCGGCAAAACTATACGGCAGAAATTTCCACTACTTACAACCCGGAGGCTCGGCACCAGAGGCCATTCAAAGTATCACTACTACGGTATAGGGATTAAGGAGAGCAGCTCCTATTATCATTCAGTTTATTCAGGAAAAGGTCTTACCAGATTCTCTGGGAGCAAGCTCAAAAATGAGGGGGGCTTCACACGGAAATATTCACTTAGCTCTAAAACAGGAACATTACTACCAGAATTTCCAAGTGCACAGCATTTAGTACTTGATGACTCTGTTTCAAAGGAAAAgGTGGACACTTTGATAATGATGTACAAAACCCACTGTCAGTGCATTCTCGACAATGCTATCAGTGTCAACTTTGAAGAGatCCAGAACTTCTTGCTTCATTTTTGGCAAGGCATGCCTGATCATCTCCTGCCTCTGTTGGAGAACCCAGTAATCGTGGACATCTTTTGCGTGTGTGACTCCATACTTTACAAGGTACTGACTGATGTTCTAATTCCTGCTACAATGCAGGATATGCCAGAAAGTCTTTTGGCAGATATTCGAAACTTTGCAAAACACTGGGAGCACTGGATGGTGTCCTCTTTGGAGAATCTCCCAGATGTTCTCTCAGAAAAGAAGCTGCCCATAGCTCGTCGCTTTGTGTCCTCTTTGAAACGTCAGACTTCCTTCTTACACCTCGCACAGATTGCAAGACCAGCACTTTTCGACCAAAACGTCGTGACCTCCATGGTGAATGATATTGACAAAGTAGATCTGAACAGCATCGGCTCCCAGGCACTGCTTTCAAATACAAGCGACCATGACTTGGATTTCTACTCTGAATATGATTCTATTTCAGTGTTTCAAGAGTTAAAGGAGCTCCTGAGGAAAAACGCCACGGTAGAGTCTTTTATCGAGTggctggactctgtggtggaaCAGAAAGTCATCAAGCCTAGCAAACAGAATGGCCGTTCGGTTAAAAAGCGGGCACAGGATTTTCTCCTCAAATGGAGTTTTTTCGGAGCACGTGTGATGCACAACCTCACCTTAAACAATGCTACTAGCTTCGGCTCCTTTCATCTCATTAGGATGCTTTTGGATGAATATATATTGTTAGCAATTGAAACACAGTTCAATAATGACAAAGAGCAAGACCTCCAGAACCTCCTGCACAAGTACATGAGGAATGCAGATGTGAGTAAAGCAACATTCACAGCTTCTCCTAGTTCATGCTTCCTGGCCAATCGCAGTAAAACTGGGATGATGTCCAGTGATTCCTCCGTTAAGAATGAGAGCCATCCAGAGTATGCGTATCTGCCCATGCCAGGTACGCCGCATGGACTGGGGGCCACTATGGTGGTGTATCAAGGAACGGAGCCAGACAGCTTCACTCTATCTGGACAACTGGACTACACCCAGAGCACTGGAACACTGATCACTCCTCCGATCTCTCCGGCCATGGCCAACCGAGGCAGCGTGATAAACCAAGGCCCAATGGCTGTGAGGTCACAGAGCAGCTGCCCCATCCAGCCTCACATGCCCTGCCAGGCTTTCCCTGAAGCCATGTGCCAAAACCTGCCCAACTCCACCTCCAGCTACTACCCCAGCTCCTCTGCCTACCAGACTTCCTGCCTTCCCCCAACCCACACTCCAACATCAGCGTACCAGGCTCGCGGAGACGGCGTGCGATACACATCCTTCAGTGGGCAGCAGCTGCCCAAGGACTgcttcagcagcagctgcagtgcCTTACCCTACAGCTCCAGAATATTTACCACTAGCTACTCGTGTTCTGCTGATCCCAACATGGAGGTCCAAGGAGTGCAGCTACTGGACACAGGAGGGTACAGCTCAGTAGGAGGAGGATGTTCAGGCCCAGTGTACACCAGcacagcacacagcgGCTACTATGGGAACAGTGGCTATGGGGACAGTCAGAGAATGGGCTCTCTGATTGACCAGCATGTGTCTGTGATCAGCAGCGTGAGCTCTATTCGCTCTGTCCCTGCGTACACTGACGTCCACGATCCTCTCAACATCCTGAATGACACGGGCAGGAAGGTAGCAGGTCCCTACTATCCCGAACAGCCTGCTTTAATGACACGCACAGCTGggtCTTCAATAGCCCCTCCTATCCcctgctctgtctctccctgcATGTACAGCACTGCTGCTCAGTATCACCATTCCCAAGAAGCCCTGCTGCCTCACCAGAGCAGTGCTGAAGTGCAAGACATGGTGTCCTCCCTGCCCCCCATCAACACTGTCTTCATGGGGTCAGCTGGAGGACCACCCTGACTATTACTAAAATAAGACTGCAATATTGATTCTCCGCTTCTGCTAGACTGAGTCAAGGAGTGGCGGCAAGTCTATGATATAAATAGTTAAGGAGAGTACTTTTatcatataatcatataaatgttacttaaaatattttgtgtactaAAAAAGTGAAGGTTTGATTTAACTTAATTTCAATACAGAATGTACACcatttccatttaaataaaattattaaaatattgcagGTTTTGCCCAAATTAAGCATTAAGCAAAGTGTTAGACTGCATTGTATTGATTtgattctgtatattttattcaaGTTGAAATGATAAGCATCTTAATGAAGTTGTTTGAGTTACgatattttcatgca
>XM_022662842.1
gtaaaataaaaaagcaaacagGACATCTCCTCGACTATTTATAACCCCATCCCCACGCCATATTCATTAACGGAAAAAGGCCATCATAGCAACATTAATGACAACATGTAATTTGAGTGGTGGGCCATTctcagcaaagcaatgatatCAACATGGCTTGGTAAAGTCATTCTCTTACCCTGTTTAGTAGTTTCTAATCACATATGATCTTTTTTGGTGGACTCTCAAGCTAGTGGTGACccttaaatgcaaaaaaaaaaaaaaaaacagtagaaggGGATAAAATCAGTAACCACAAACATACAAAGTGCATCTATATGGTAAAAactttcagataaaaaaaaaatatagtgcTAAGGATATAAGGATGTGCATGATCTTGCTGCCCTAGCCCTGCTGAAAGCAGGCACTGCAGAATGAAGGCTCTGGATGGGGCTATAGTCCAGTGGAAAGGCCACAGAACAGGTTTGATGGAGACGATGGCCCCTCGGGTTAATCATTAATACACAGAATCTACTGCCAGTCTTCTGTAAATAAGATAAATGCCCCCAAGGCACTCACCTCAGTGACGTACTATTTCAGACACAGCACAGCTTTAATTAAGACAGGAAGGTGTAACGTATTTCAGCGGCTTGATGTTTGGATGTGGACAAAATGATTCTTTCTAAATTTCAGTTTGAATATTAGTGTAAAGGATGTTTGTGTACACTGTTTCATTTTGGTGTTAGTGATTTTTTTCTCCAGAACCTGAGATGTGCACCATTACAGTACTGGACCAATGCATCAAACTGGAGtctcttttttaaagtgtttattgaaaatatcTGAAACGGAGGAATACTGAGTGTGTCCACAGCTCATCTTTTTGAATGAACCTGGTAACATCTCAATGAAAAGGAATAGTGGAAGTTCTGTGGAGAATAACATGTTTCATCAGCTTCAGCCACCACAGCCAAAGAGGACTTACAGTAATGCTGATGATTTCCACCCAGCAAACTCCAGTGAGCAGCAAGACCTtagaaaaaacatgtttttcaaaGAAACGtttgaggaagaggaggaggattcAGGAATTAAATCAGAGGCAGAGGAAAGCAATGGAACCATATCCTCTGAAGATGACTTAGACCACCTTGAATACTCAAAGAACATTGCTCTGAAGCAAAGTGTCGAAAAGAAAAGCATCAGTCAAATCATCAAAGACAAGAAGAAACAGACCCAACTAACATTATTGTGGCTTGAGGAAAACTATATAGTTTGTGAAGGTGTGTGCTTGCCTCGCTGTATCCTCTACGCTCATTACCTGGACTTCTGTCGGAAGGAGAAGCTAGATCCTGCTTGTGCCGCCACTTTCGGCAAAACTATACGGCAGAAATTTCCACTACTTACAACCCGGAGGCTCGGCACCAGAGGCCATTCAAAGTATCACTACTACGGTATAGGGATTAAGGAGAGCAGCTCCTATTATCATTCAGTTTATTCAGGAAAAGGTCTTACCAGATTCTCTGGGAGCAAGCTCAAAAATGAGGGGGGCTTCACACGGAAATATTCACTTAGCTCTAAAACAGGAACATTACTACCAGAATTTCCAAGTGCACAGCATTTAGTACTTGATGACTCTGTTTCAAAGGAAAAgGTGGACACTTTGATAATGATGTACAAAACCCACTGTCAGTGCATTCTCGACAATGCTATCAGTGTCAACTTTGAAGAGatCCAGAACTTCTTGCTTCATTTTTGGCAAGGCATGCCTGATCATCTCCTGCCTCTGTTGGAGAACCCAGTAATCGTGGACATCTTTTGCGTGTGTGACTCCATACTTTACAAGGTACTGACTGATGTTCTAATTCCTGCTACAATGCAGGATATGCCAGAAAGTCTTTTGGCAGATATTCGAAACTTTGCAAAACACTGGGAGCACTGGATGGTGTCCTCTTTGGAGAATCTCCCAGATGTTCTCTCAGAAAAGAAGCTGCCCATAGCTCGTCGCTTTGTGTCCTCTTTGAAACGTCAGACTTCCTTCTTACACCTCGCACAGATTGCAAGACCAGCACTTTTCGACCAAAACGTCGTGACCTCCATGGTGAATGATATTGACAAAGTAGATCTGAACAGCATCGGCTCCCAGGCACTGCTTTCAAATACAAGCGACCATGACTTGGATTTCTACTCTGAATTGTTTCAAGAGTTAAAGGAGCTCCTGAGGAAAAACGCCACGGTAGAGTCTTTTATCGAGTggctggactctgtggtggaaCAGAAAGTCATCAAGCCTAGCAAACAGAATGGCCGTTCGGTTAAAAAGCGGGCACAGGATTTTCTCCTCAAATGGAGTTTTTTCGGAGCACGTGTGATGCACAACCTCACCTTAAACAATGCTACTAGCTTCGGCTCCTTTCATCTCATTAGGATGCTTTTGGATGAATATATATTGTTAGCAATTGAAACACAGTTCAATAATGACAAAGAGCAAGACCTCCAGAACCTCCTGCACAAGTACATGAGGAATGCAGATGTGAGTAAAGCAACATTCACAGCTTCTCCTAGTTCATGCTTCCTGGCCAATCGCAGTAAAACTGGGATGATGTCCAGTGATTCCTCCGTTAAGAATGAGAGCCATCCAGAGTATGCGTATCTGCCCATGCCAGGTACGCCGCATGGACTGGGGGCCACTATGGTGGTGTATCAAGGAACGGAGCCAGACAGCTTCACTCTATCTGGACAACTGGACTACACCCAGAGCACTGGAACACTGATCACTCCTCCGATCTCTCCGGCCATGGCCAACCGAGGCAGCGTGATAAACCAAGGCCCAATGGCTGTGAGGTCACAGAGCAGCTGCCCCATCCAGCCTCACATGCCCTGCCAGGCTTTCCCTGAAGCCATGTGCCAAAACCTGCCCAACTCCACCTCCAGCTACTACCCCAGCTCCTCTGCCTACCAGACTTCCTGCCTTCCCCCAACCCACACTCCAACATCAGCGTACCAGGCTCGCGGAGACGGCGTGCGATACACATCCTTCAGTGGGCAGCAGCTGCCCAAGGACTgcttcagcagcagctgcagtgcCTTACCCTACAGCTCCAGAATATTTACCACTAGCTACTCGTGTTCTGCTGATCCCAACATGGAGGTCCAAGGAGTGCAGCTACTGGACACAGGAGGGTACAGCTCAGTAGGAGGAGGATGTTCAGGCCCAGTGTACACCAGcacagcacacagcgGCTACTATGGGAACAGTGGCTATGGGGACAGTCAGAGAATGGGCTCTCTGATTGACCAGCATGTGTCTGTGATCAGCAGCGTGAGCTCTATTCGCTCTGTCCCTGCGTACACTGACGTCCACGATCCTCTCAACATCCTGAATGACACGGGCAGGAAGGTAGCAGGTCCCTACTATCCCGAACAGCCTGCTTTAATGACACGCACAGCTGggtCTTCAATAGCCCCTCCTATCCcctgctctgtctctccctgcATGTACAGCACTGCTGCTCAGTATCACCATTCCCAAGAAGCCCTGCTGCCTCACCAGAGCAGTGCTGAAGTGCAAGACATGGTGTCCTCCCTGCCCCCCATCAACACTGTCTTCATGGGGTCAGCTGGAGGACCACCCTGACTATTACTAAAATAAGACTGCAATATTGATTCTCCGCTTCTGCTAGACTGAGTCAAGGAGTGGCGGCAAGTCTATGATATAAATAGTTAAGGAGAGTACTTTTatcatataatcatataaatgttacttaaaatattttgtgtactaAAAAAGTGAAGGTTTGATTTAACTTAATTTCAATACAGAATGTACACcatttccatttaaataaaattattaaaatattgcagGTTTTGCCCAAATTAAGCATTAAGCAAAGTGTTAGACTGCATTGTATTGATTtgattctgtatattttattcaaGTTGAAATGATAAGCATCTTAATGAAGTTGTTTGAGTTACgatattttcatgca

Function

symbol description
rfx6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endocrine pancreas development. Predicted to be located in nucleus. Is expressed in intestine; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human RFX6 (regulatory factor X6).

NR:

description
LOW QUALITY PROTEIN: DNA-binding protein RFX6-like

GO: NA

KEGG:

id description
K19521 RFX6; regulatory factor X 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022662838.1 True 3992 mRNA 0.44 19 54815778 54826525
XM_022662842.1 False 3977 mRNA 0.44 19 54815778 54826525

Neighbor

gene id symbol gene type direction distance location
vgll2 vgll2 coding downstream 34398 54772275 ~ 54781380 (-)
dcbld1 NA coding downstream 83090 54695183 ~ 54732688 (-)
LOC103032288 LOC108424430 coding downstream 156752 54655404 ~ 54659026 (-)
nus1 nus1,LOC107736830 coding downstream 163314 54642015 ~ 54652464 (-)
tab2 tab2 coding downstream 291473 54468017 ~ 54524305 (-)
trnal-cag_7 NA coding upstream 17537 54844062 ~ 54844144 (-)
LOC103025507 NA coding upstream 417591 55244116 ~ 55258518 (-)
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding upstream 488435 55314960 ~ 55367322 (-)
LOC103021751 NA coding upstream 621601 55448126 ~ 55460855 (-)
ttc32 ttc32 coding upstream 635509 55462034 ~ 55465720 (-)
G28231 gopc non-coding downstream 149808 54663719 ~ 54665970 (-)
G28221 NA non-coding downstream 281946 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 352818 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 411961 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 450745 54335849 ~ 54365033 (-)
G28262 igf2r non-coding upstream 24027 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 31185 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 40922 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 247476 55074001 ~ 55079665 (-)
G28299 LOC103032688 non-coding upstream 330793 55157318 ~ 55159137 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 191938 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 760081 54049795 ~ 54055697 (-)
akap7 NA other downstream 908366 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1193420 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1965872 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 439566 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 605556 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 673375 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 776345 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 808007 55634532 ~ 55641375 (-)

Expression


Co-expression Network