LOC111189704


Basic Information

Item Value
gene id LOC111189704
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57218910 ~ 57226087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022663361.1
AATTGCTTATgatgtatataattttttgtgaataagagtgtaactttattttatatatttggttTCGTAATACAAGCCAACAGTCTCGCGAGAGTATCTCGCATAGGTTTCGTTTTCATGCTGGCTTCAGGCTGGACTCCTCGTGTGCTGCTAAAAAGGTTTTACTGATAGATGTGTTAATGACTGAAGTGAGAAAGCCCTGTTGAGGATAATTCCCTTGTACGATGCATGCAGCCAACGAGTTTTCACGGTGGATTAGGAGAGAAGCTTCAAATAAACCTGTGAGGAGAAAGCCACTTGTGTCTGCCTGTGCATTGAGGGAGTTACAGTGAAAACTCGACCTGTTCGTCAGCGCGAGTGGACGTGAAGTGATGCGGCAGGATTTAAGAACCAGCGGACGTGTTTATTGCGCACGGAGCCGATAGCGCCGGACTGAGAGATGagtcgcgcacacacacagaaggaGCTAAAGAAccacacagctacacacagcaaCGCCAAGACATAGCCACAAATACATTAATCACTAATAAGTAAAGAGTGATTTAAGAAGAGGGCtttgtaaaagtataaaagactGTAAAGCAAGTAATATTTCTGTGGTGTGTGGTAAAGTAAGAGGTGTTTGTTTCGTATTAGCTAAGTTCGCATTGTATAGAGAAGTGTACCATAGATAAGGGGTACATTAATTTCCCATTGAATGTTCTACAGTTCAGATTTATAGTGTGTTTACAGATTATTATTTGACATCGTATATTTGTTTTCAAGTGTGAGCTAACTTGGCCTAAAGCAGTGATTCAAAATGACAGAGCCAAATAAGCAGATAATTCAGGGTAGAAATAGTGAACATTCCTGTGATCAGCTTAAAGAGGATGGTGCTGAAGACCAGCAAGAAAAAGAGCAGCATCCAAGACGAAGTGAAAGAACCAGAACTCTAACAGAGAAGGGCAAAGAAATGCAAGACAAAAGGATAAAAGCACTTAAACAAAGATTTAACTATATTTACAGCAAATGGAGAGCACATGTGAGATCTTCTAAAAGGTCCCTTATGCAAGCAGAAGAGCCTTTGTCTGATGATTTGCTCAATGATATCATTGGTGATGTCACAGGTCTTTCTGCAGATGTTCAGCTTGTATATGATGAGCTACGCAAAATCTCAGTTCCAGACCAGGAAGTTCGTCGAAGTGTGGATCTCTGTGTAGAAATGTCTAATTTCATCGTAGCTAGAGCTTCAAGTCGACTGGATGGAAAAGttccagaaaaagaagaagaagattggCCTGAAGCAGGCTCTCTCTTCGACTCAAGCTCCTGTAAATCAGGGTCCCTCACTTCATACACAAAAGGCACCTCAGAGCACTCAAACCAGTCGTCTGTGAAGCGACAGGACGCtgcagctgaagctgctgcaagCCTAGCTGTCCTCAATGTGTTACAAGAACAGGAGAGAGAACAGTTGGAATTACAGTACTTAGAAGCAGAAGTTAAAAGGAAGATAGCTGATCAAGAAGCAGCAGCTGTAAGACGTCATTTAGAACAGGAAGCAGAAGAGGTGCAACGAAAGATGAAgagggaagaagaagaagctaaAATCAAAACTCAGCTGGAGGAAGAAAATGTAGTCATGCAAAAAACTCTTGAAGAAAAACGAAGAAAGATAAAGCACTTGGAGACAGTGAAAAGTCTTAATGCAGCACAAGCAAGAATTCTGGTGTATGATCAAgtgagaaacacagaaaaagacGATCAGAAGGACATTCTGGACCATAAGTTGGTAGCAGACAACCAAGTGCCTGTTCCTATAAGTCATCCGTCCATGTGTGTTTCTCCTGTTCCTAAAGCTGTGGCCACATCCTCGAATGAAAGTACAGCAGAGCTTGTTAAGGTGCTAGCAGGGGCTTTAAGTGCCAACAGAATTCCAATTCCTGAACCATCCGTTTTCAGTGGAGATCCATTAAAATACAATGATTGGAAGCTCTCGTTTGAAACATTGATTGACCAGAAAACCATTCAAGACAAGGAGAAGATATACTACCTCCGTAGATATGTGAGTGGGCAAGCTAAAACAGCACTCGATGGCTATTTTTTACTCGGAACTGAATCTGCCTACGTTGAAGCATGGAAGATTTTAGAGGAGAGATATGGAAACCCATTCACAATTGCTAAATCTTACAGAGACAAGCTCCATACTTGGCCCAAGATAGGACCTAAGGACAGTTTTGAGCTCAGAGCATTTGTTGATTTTCTCCGTAGTTGTGAGGCTGCCATGGTTCACATCAAAGCATTGGATATCTTGAATGATTGTAATGAAAACCGAAAAATTCTGTCAAAGTTACCAGACTGGTTAACAGCAAGATGGAACCGAAAGGTTATTGAAGTAGAAGAAGAGAGTAACCAATTTCCCTCATTCAGTCACTTTGTGAAATTTCTGACCAGAGAAGCAAAAATAGCTTGTAACCCTGTTACTTCACTGCAGTCACTGAAACAAGGTGAGACAGAAAAAACAAGATTCCAAAGACACCAAAGCATTGGAGCAAAGACATTATCCACAAGTACTACTGAGAAGACTGACAGTACATGCACTTTCTGTAAGAATGCTGAACACACATTGCATAAATGCAAGAAGTTCACGGAGAAAGCAGTTTCTGACAGAATCAAATTCATTCAAGGCGAAAAGCTTTGCTTTGGTTGTCTCAAGCCTGGTCACTACTCGAAGTTCTGCAACAGTAGAAGTGTTTGTGACAAATGCCACAAACTACATCCTACATGTCTACATGAAGACAGAACCAAagaacaacaaaacacaacacgAGCCAAGCAAAATTTAAGACAAGAAAACCCAAGTTCAAGCCAAGTTCACTACAGGGAAACCCCTCAGTTTACACAACATAAAGACACATCTACCATCGCTACTTCAAATAGAGTAGTACTTCATGAAGCCAACTTACAAACAGCTGCAATAATTCCTGTTTGGCTTTCATCCACAGTTCAACCAGCACATGAAATCCTAGTGTATGCTCTGTTGGATTCTCAAAGCGACACAACCTTTGTTTTAAGTGAAGTGGCAGATGCTTTGAaagcaaacaaagaacaagTCAAGCTTAAGCTCTCTACTATGACCTCAAGAAACACAGTAGTAAAATCTCAGAGAGTGAACAATCTCCAAGTGCGTGGCTTTTACTCTGGTAAGAAGATTCATCTACCACCAGTCTACACACGTGAGTTTATCCCAGCCAACAGAACTCACATACCCACAGATGGCACTGCAAAGGCTTGGTCCCACTTAGAGCACCTCCAAGATGAGATTGCACCTCTTCAGGACTGTGAAGTAGGTCTACTCATTGGATATAACTGCTCACAGGCCCTGCTTCCAAGGGAAGTTGTTTCTGGCAAAGAAAATCAGCCTTATGCACAGCGCACAGACCTTGGATGGTGTATTGTTGGCCACAGCAATCCCTGTGTGGACTATGGTGACGCCATTGGAATCAGCCATCGGATAGTAGTGAGACAGGTGACAGCAGGTATGGAGACATCTGTTAATCTAAAAACTCAAGTACACTATGTGAATCGAATCAAAGTGAAAGAGATCACTCCAGCTGACATAATAAAAGTGCTTGAATCTGATTTTTCAGCAAGAATCAGAGAAGATGATTCTGTGTCACAAGAGGATCTCAAGTTTCTTTCAAAGTTGAGAGACAACATTACGCAAAAAGACAACGGTCACTTCGAAATGCCTTTGCCATTCAAAGATGAAAGACCGAATTTATCGAACAACAAGATATGTGCAATACATCGACTGAAATGTCTTGAAAGGAAATTTAAGAAGGATCAGAGGTACTATAAAGACTATGTAGCCTTTATGAACGACATCCTTTCACGTGACGAGGCAGAAAAGGTCCCTGAGGAAGAACTTGaccacagttcagtttggtatATTCCACACCACGGAGTTTATCATCCACAGAAGCCAGGAAAAATACGTGTAGTATTTGACTGTTCTGCCAAGTATCAAGACACATCCCTCAACGACCATCTTCTCACCGGTCCTGACTTGACAAATTCATTAGTGGGTGTCCTGTGCCGCTTCCGAAAGAGTCCTGTTGCAGTCATGTGCGACATAGAGCGGATGTTCCACCAATTTCATGTGAAACGGGAAGATCAAGATTACTTGAGATTCCTATGGTGGGAAAATGGCAACTTGGAAACCACACCATCAGTGTACAGAATGAAAGTTCATTTGTTTGGAGCAGCCTCATCCCCAGGATGTGCCAACTTCGGCCTAAAACATCTGGCAGAAAAAAGCCAAGGACAGTTCAGAAAAAACACCATAGACTTTATTCTGAAGAATTTCTATGTTGACGACGGGATTGTGAGTCTTCAAACTGAGAAGGAAGCTATCCAACTTGTCAAGGAAGCAAGAGACCTTTGCAACACTGGCAAGTTACGGCTCCATAAGTTTGTGTCCAATAGTGAGAATGTGATTGCAACTATTCCAGAAGAAGAACGCTCCATGGTCAAAGATCCAGACATGGCTTTGAGTTTGCCATATATGGAGAGAGCTCTTGGAGTAGAATGGTGCATCACATCAGACTCATTCAAGTTCAGAGTTCAAGTGAAACCCAATCCTCTTACACGAAGGGgtgtgctgtccactgtagcCTCTATGTATGATCCTATGGGGTTCATGGCACCCTTCATACTTTTGGGTAAACAAATACTCCAACAAATGTGCAAAGGGAAAGTTGGCTGGGATGACGAACTTCCAGAAAACTTACGACCTCGGTGGGAGTCCTGGCTTAGAGACCTACCCAGTCTTGCTGAAATGCAGATTGAACGATGCTTTCTACCATCAGGGTTTGGCAAAGTCAAAAGGCAAGAGCTTCACACCTTTTCCGATGCAAGTGTTTCTGGATATGGTGCATGTACTTACCTACGCACCATTAATCAGTCTGATGAAGTCCATTGCTGTCTTGTAATGGCAAAATCAAGAGTTTCCCCGACTAACGTCATAACTATACCGAGGCTTGAACTCTCTGCAGCAGTTATTGCAGTCCGAGTCAGTGATATGCTTCAAAGGGAGTTAGAAATCGAAGACCTGCAAGAGTACTTTTGGACAGATTCTACAGTTGTGCTTGGTTACCTGAATAATGACGCCAGAAGGTTTCAGGTGTTCGTGGCAAACCGCATACAAAGAATCAAATCAAGTACAAAAACTGAACAATGGGCTCATGTTTCCTCTGACAATAACCCAGCAGATCATGCCTCTCGGGGTTTGACTGCAGAGCAGCTTAAAACATCAAGCTGGTTTACAGGACCAAAGTTTCTTTGGCAAAGAGATCTACCCGACAGAGAGCTCAAGGTGGGAGAAATCAAGGCAGATGATCCTGAACTCCGCAAGTCTTTTGTGTGTAACACTGATGCAAGGGAGGTCAGATCAATATTGGATCGCCTACAGAaattctctgattggtcaaggGTAGTAAGAGCAGTTGCCAGATTGAAACGGGCAATTAAAGAGTTCAAAGGACTGAAGCAAAGAACTAATAAAAGCACAAGCTTAGAAGAACGGAAAGAAGCTGAATTTGCTATAGTTAGATTAGTTCAAGAAGAACCGTTTTCTCATGAGATTAAGAGGTTGAAGCTAAAGGACAAGGATGCTGAGACCAAAGACAGCAAGTTGTGCAAGTTAAGTCCATTCTTGGATGAAGAAGGTATCCTACGAGTGGGAGGACGCTTAAGTCAAGCCATGTTGCACCCACATGTGAAGCATCCAGCAATACTTCCGAAGAACAGCCACATTTCGGATTTACTCATCAAGCACTGTCACGAAAAAACACAGCATCAAGGGCGAGGAATGACGGTTAATGAAATCCGAGCAAACGGATGGTGGATCATGGGATGTAGCAGTGCTGTTTCTTCACACATCTTTAAATGTGTTAAGTGCAGAAAGTTCAGGAGATGTGCTGAAGAACAAAGGATGGGCGACTTACCACAGGATAGAACGGAAACAGTTCCACCCTTTACTTACACTGGCATAGACTGTTTTGGTCCCATCTATgtgaaggaaggaagaaaagaGCTCAAGAAATATGGTCTAGTACTAACCTGCCTCTGTTCTAGAGCCATACATATAGAAGTGGTTGACGATTTGACGACTGATGCATTTATCAATGCTTTAAGAGCATTCATTGCCTTAAGAGGACATGTTCGTCAACTAAGATGTGACCAAGGAACCAATTTTGTTGGTGCGAAAAGAGAGTTTGCAGAACTCATGAAAGGGATGGATCAAGAAAAGGTGCAGGCTTTAGGATGTGAGTTTCTTATGAATCCCCCTGCAGCAAGTCACAGAGGTGGTGCCTGGGAAAGGCAAATAAGAACTATCAGAAGTGTTCTTACTGCTATTCTGGACCAGTCAGCACAAAGGCTTGATGGCACCTCTTTGAGGACATTTCTGTATGAGGTCATGGCCATCATTAACAGTAGACCACTTACGGTTGAGAATTTGAACGACCCAACCGGACCTGAACCTTTGACTCCAAACCACATACTTACAATGAAGTCTACCATTATTCTACCCCCACCTGGACACTTTGTCAGAGAAGATCTTTATCTCCAAAGAAGGTGGCGCAAAGTCCAGTATTTGGCTAATGAATTTTGGATTAGATGGAGAAAGGAGTATCTTTTGAATCTACAGATTAGACAGAAATGGCACAAGACTAGAAGAAACATGAAAGTCAATGACATTGTTCTTCTACAAGATGCGCAAGCACCACGCAACGAATGGAAGCTGGCCAGAATCACAGAAGTCTACCCAGGGTTAGATGGTAGGGTGAGAAAGTTAAGATTGCAAGTTAGTGACACTACATTCGACAAAAAAGGGAAGCAAACAACTAAAATAACATTCCTTGAAAGACCTATTCAGAAGGTTGTTACTCTGCTCGAAGCAGATTAAGGTGTTTAATGCGTTCAGCCTAATTGAGTAATTGTTAACTGGTGAACAGCTTTGTGTAAAGAAATCCCACATCAAGGTTTGTGATTTGGTGGGAGTGTAACTGTTGTAAATAATTGCTTATgatgtatataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022663361.1 True 7085 mRNA 0.42 2 57218910 57226087

Neighbor

gene id symbol gene type direction distance location
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding downstream 366480 56839749 ~ 56852430 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding downstream 395859 56820485 ~ 56823051 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding downstream 460144 56755389 ~ 56758766 (-)
zfyve1 zfyve1,LOC107721321 coding downstream 495136 56712617 ~ 56723774 (-)
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding downstream 929072 56274486 ~ 56289838 (-)
vrtn vrtn coding upstream 153726 57379813 ~ 57384666 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding upstream 199218 57425305 ~ 57431655 (-)
LOC103044876 NA coding upstream 214584 57440671 ~ 57446335 (-)
LOC103044195 NA coding upstream 224838 57450925 ~ 57490723 (-)
LOC103043676 LOC108424526 coding upstream 381683 57607770 ~ 57655080 (-)
G28823 NA non-coding downstream 208203 57010477 ~ 57010707 (-)
G28813 NA non-coding downstream 393909 56824696 ~ 56825001 (-)
LOC111189610 NA non-coding downstream 604843 56588694 ~ 56614067 (-)
G28728 LOC108415780 non-coding downstream 709222 56487213 ~ 56509688 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 979187 56232707 ~ 56239723 (-)
G28938 NA non-coding upstream 537414 57763501 ~ 57764257 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding upstream 572004 57798091 ~ 57798381 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding upstream 572975 57799062 ~ 57800871 (-)
LOC111189782 NA non-coding upstream 623647 57849734 ~ 57853758 (-)
G28997 NA non-coding upstream 650184 57876271 ~ 57876745 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 524075 56640351 ~ 56694835 (-)
G28536 NA other downstream 1402312 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1577535 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 1612024 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 1717150 55499900 ~ 55501760 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 586175 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 765554 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 933120 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 1706876 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 1772454 58998541 ~ 59085886 (-)

Expression


Co-expression Network