LOC103046620 (syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242)


Basic Information

Item Value
gene id LOC103046620
gene name syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57215344 ~ 57284784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022663365.1
CTGTGGGTTTATTCAGTCAACTGACAGCAGGACCGGCTGTAGTTAATAACTCACTCCGTCCTCTCCCCGCGCGCGCGCGAGACACGCTTCCGGACTCGGTGTGGTTCCTGCCGTCTGTACCGGGGAGGAGATGACTGTTCTCCAGCACGCGGACATGCTCTCAGTGAAGGTGGCGGATTTGTGCGTCCTGTCAGTCAGTCAGCAGCGCTGGGATTATGCGAGTGCAGAGCTCACGGCCTGTTGAACACCATTAGCACTTGTCACATCAGTCCAGCCAAGGTCGTCGCTCCTGCCCACATCCCCAGACCTCCCACCCAGCCTTAAACAGCACACAGTCACTTTCCCTCTGACACCGGACCATGGAAAGCCTAAGCGAGCTGCAGAATCCTCTCCTGGACAAGAACAGTAAACACATAGTCAAGGCAGACTACGGATACAGGAGCGACTTCCCCACTAACCAGTACCAGGAGAACATCATCAACTACTTTGTGACGAGTGGGGGAGGTGGCAGTGTGGGAGGGGTCGGGGGAGGCGGAGGAGAAGTCGGGGTCACGCCGAGCAACGGCAAGGCCAAATCCCAGCTCCTGGATGCCACTTCCCTGCACCTGGCCGTAGAAGCCTTCTACAAGCCCAACTTCATCCTCTACAAGGACGACGTCACCATCAAAGGCAAGGATTACAAAAGCGAGTGCTGCGAGACCACCTTCACTGAAAAGAAAGATAAGGAAGCCACTGTGGAGACCCCCAGCACTGAAGACCCACAGGCTAAGCTACTGGATGAGAACGAGGTGAAGATCCAGACGGTGTCCTACGAGGTGGAGGAAGAGTACGTGGAGTACGAGACGGATTGCTCCAGTGACAGTGAAAGTGAGGATAACTTCATCGTCATCCCTCCTCGTGATCACCTGGGCCTGGCTATCTTCTCCATGCTCTGCTGCTTCTGGCCTCTGGGCATCGCtgctttctatttctctcaggGGACCAGCAAAGCCGTGACAAAGGGAGACTTCCCCATGGCCAGCATCGCCTCGAGACGGGCCCTGTTCCTGGCTGCTCTCTCCATCACCATCGGGACAGGGGTGTATGTGGGTGTGGTGGTGGCCCTCATCGCCTATCTCTCCAAACCGGGTCACATATAGCAGAAGGAACGGGATAAGGACCTAGAAAAGCCTCTTCAAACGCAGTTACGCCTCTGAACTTTTGGCAAATTTCCCTCTCGCACATCTCCCTCCCCTCCCTTGGACTGCCCGTCGTCCCAAATTAGAGACAGAGGGATGGAGCCAGAGAGGACGTTTGGGAAAGCTGGGGCACTTTTCATCAAAGCAGCACCTGAGTGAATGGAAAGCTTGTGCAGATGTGGCTTGGCCTCGTGTGACTCCACAGCAGCCGCAGCTCCTTTGGGTATCTGAACTTTACACGCTTGCTAAAGTCTAAGAGCATTTCGGgcaaatgggaaaaaaaaaacaaactagagGAAGAAACAGAGCATCCAATTAAACTACTCCTGAGGGAGACTGTTCCAGAGGACACTATGTAAGGATCAAAAGAGAACCCAAGTGCCCTTGGATTTGATTTCTCCCTTGTAAGCTGAGATCCGTTTTCAACCAGAAGAGAAACGTAAAGCAACTGTCTACTTCTACTATAGTCTTTTCATTTACTCAGTCGGTTAATAGCATCACCGATGGCAGGGGCTCAAAAAAATAGCCCTGTCGGACACCGAGAGCCCATCAGTCTACAAACCATTCACTGCAATCCTGTGTATACTGAGTTGGTATAATGCAGCCATATCTCACCATCTGTTCTGCAAGACAATTCAGAACCAAACCGACTAAGGATTAGAATATCAAATCCTATTATATGTTTACCTTCCTAATAGGCAATGCCGGCATGAATACCGAAACCTCACTAAGGTTTTGAACTGAGGAAGGACAGATATCATGCTTGGCAGTACATCCTCGGCGGGGTGTGAACTACATCAGTATTCCTATCCAAGAGAAGCGCCGCTCCATATGAATACGGCCTCTGCTGCTCTCTGTGCAACTCTAACTCATTTACGGCTCATGTTTTGTATTCTTTGTTTCTCCTCATTGTGTCCGAGCTCAAAGCTCTGCTACTCTCACTACTCTGGCCTTAGGATGCCTGCTGTGGATAGAGACAGGCTAGGAAAAACAACACCACAACATcatcagaaaacaaaaacacccCCCACATATCTCTGTTTGATTTCAGTTTTTCTCAGTGTGGTTTCAACTTCTAGTCTGCTTAACAGCTAAACAGAGATGAGAGAAGAGTATGAATACTCTTTAAACTAAAGGTGCCACAAAGGGTTCTTTGAGCGATGCCATAGAACAtttcttattatatttttgagatTCTCCACGTTCAACTAATTGCACTCATCGTCAAATAAATGGTTTAGAAAATAGCTTAGCTGCACCCAGAACGAAGGAAGgtaggttaccaggaacaataaatgaaacaGACGTAGTGTGATGCAACACATGTGCAACACAACATTTCCAGACATCTCAGCATggaattgtagaggttcctaatgttgtCCTGTGATAATCAATTCTGTGCAGCTTGAATCTTCACCCAATTCCTGCAGATTAAGATGACAGCAGTATGCACATAAGCATTGTCTTAATTATATAGCGCAATGGATTGTGCATTCTGAAGACATAGGGCTgttggttgcaggaccttattacCTTTATTAAGATCGGATCTTAAGTGTGCCTGTAATAAggaccaaaggtgatctggcattgtgcaaaaaaaaaattgctgcgCAAACTATAGCACCAGGCCTTCAGGATTTTTGACACATGACAAAAATCCATTAATGTTAGTGCTGAACACAGTACTGAACATGGTGCCACATCCACACATAGATTTGTTGGACATCCCCATcaagacaaaagcaggactcATCACTAAAGATAACCCACTGCCATTCTGAGTTGTCACTGAACCATGAACATGAAAGTGGTGCATGACCACCCACCAAGTTTCGTTCCTGTCGGTTAATTCCTTCTGGGTAcagtcttgtttatttttttatatacagtctatggcaGGGGTCCTCAATAGGTTTTGAGataaactgttctgcaattgggttcaacaaccctctgggctggagagctactagtctgtagcactccatctcattacacttcattttccaaaaagattttttttttgtggcccaccagttaatggcttgaaaaatatCTGTGCAGCATTGAAGACCATTGCTATAGAAGAGTCTAATAAATCAGGTTTGTAGACAAAAAGGTCTTATCTACTCAAATAACATGCCCTTGTGGGCCCTGTATATGTAACCCAAATGGAAACCAGAAAGTTTGGTCCAGAGGTTCCATATGGGagctttatgtatgaatgtcAGTGATTGGACCAGGATGGGTTAAAAATGGACTCCACTGCACACTACATAGTATGGGCCTAGATGGGACCAATGATGAAGATGGAGCCTGAGCCTAAGCATTCTAGCTGGAATGCAATGAATGTAAATTACCTTTTAAAGGTTAAGAGAACCATAACAACATACATTTGTTATGTTGTTTCATAAAATTAAAGGGTTTCTATTAGTGAAATGTGTTTTATGCCACATGAAATCGTTTCTCTATGACTTTGTACAAAGACCCTTTTGGCACCTTACATTCTAAAGGTtgggaaaaaaacatgtacagtaTAAAGATACACCTGGTCAAAATCCTTTACCAGATATGTATTTTTATCTGGCAAATAGCTGCGAAATAACAGAGAGACATGAATCTGTATTGATTGAACGACCAGTTTCACAGCAGGGTCTCTGATGA

Function

symbol description
syndig1l Predicted to be located in Golgi apparatus. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle and membrane. Orthologous to human SYNDIG1L (synapse differentiation inducing 1 like).

NR:

description
PREDICTED: synapse differentiation-inducing gene protein 1-like

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23906 SYNDIG1L; synapse differentiation-inducing gene protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022663365.1 True 3848 mRNA 0.46 5 57215344 57284784

Neighbor

gene id symbol gene type direction distance location
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 395908 56767269 ~ 56819436 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding upstream 449545 56759706 ~ 56765799 (+)
pigh pigh coding upstream 484006 56724380 ~ 56731338 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding upstream 579851 56486500 ~ 56635493 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding upstream 941016 56261636 ~ 56274328 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding downstream 120967 57405751 ~ 57407393 (+)
zbtb25 zbtb25 coding downstream 148370 57433154 ~ 57438015 (+)
LOC103047529 NA coding downstream 493421 57778205 ~ 57788035 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 510608 57795392 ~ 57800871 (+)
LOC103042834 NA coding downstream 563683 57848467 ~ 57855123 (+)
G28833 NA non-coding upstream 96621 57118496 ~ 57118723 (+)
G28822 NA non-coding upstream 204625 57010477 ~ 57010719 (+)
G28807 NA non-coding upstream 385327 56829621 ~ 56830017 (+)
G28805 NA non-coding upstream 390345 56824688 ~ 56824999 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding upstream 392308 56820590 ~ 56823036 (+)
G28864 NA non-coding downstream 113164 57397948 ~ 57398221 (+)
G28872 NA non-coding downstream 165426 57450210 ~ 57516305 (+)
G28955 NA non-coding downstream 505467 57790251 ~ 57790951 (+)
G29003 NA non-coding downstream 626542 57911326 ~ 57911593 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 776141 58060925 ~ 58076530 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 509252 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 761410 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 903233 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 975615 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 1812014 55380604 ~ 55403330 (+)
G28865 NA other downstream 117141 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 518107 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1132610 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1779689 59064473 ~ 59112315 (+)
G29382 NA other downstream 1935748 59220532 ~ 59221036 (+)

Expression


Co-expression Network