slc10a4 (slc10a4)


Basic Information

Item Value
gene id slc10a4
gene name slc10a4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63123306 ~ 63131100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664317.1
TGCGCGACACCGGGGCGCGCGCGGAGATGCCCGCGGAGGGTCCAGCGCCCTTCTGGGACTCTCCGCTCAGCCACGGCATCAGCGTGTTCGTGGCCTTAACGCTGGGCTTCACCATGCTGGGGCTGGGCTGCACGGCGGAGGTGCGCGAGCTGCGTGAGCACGCGCGGCGGCCGGTGGGCGTGCTGCTGGCCGCGCTGTGCCAGTTCGTGCTCATGCCGCTGCTGGCCTTCGTGCTCGCGCTCGCCTTCTCTCTGGACGACGGAGCGGCGGTGGCGGTGCTGCTGTGCGGCTGCTGCCCCGGGGGCAACCTGTCCAACATCATGACCCTGCTGGTCAACGGGGAGATGAACCTcagTGTGATCATGACCATCTCCTCCACGCTGCTCGCGCTGGTCTTCACGCCGCTCTGTCTGTGGATCTACAGCCGCGCGTGGATCAGCGCGCCCGCCGTACAGCTGCTGCCTCTGGGCGCCATAACGCTCACTGTCTGCAGCACGCTCGTGCCCATCGGCCTCGGGCTCGCAATCCGGTACCGATACCCGCGCGCCGCCGACAAAGTGCTGAAGGTATCGCTGTGGCTGCTGTTCGTCACGCTGATTATGCTCTTCATCATGACCGGCGTCATGCTGGGCCCTGAACTGCTGGCCACCATCCCCCCCTCAGTCTACGTGGTGGCTGTGCTGATGCCTTTGACTGGCTATGCGGCCGGTTACGGCCTGGCCATGCTCTTTGACCTGCCACCCAACAGCTGCCGCACTGTCTCTCTAGAGACGGGCTGCCAGAATGTGCAGCTGTGCACTGCCATCCTGAAGCTGGCCTTTCCACCCGAGCTGATGGGCGGCATGTACATGTTCCCACTGCTCTACGCACTGTTTCAGTCGGCCGAGGCCGGCGTGTTCATCCTGGGCTACAGAGTATACCGTAGAGAAGTGCTGCGCAAGCAGGACCTGGAGCAGGACGGTGACGATGACACCAACATCACCTACAAGACACTCAAGGAGGAGGATGGGCCTTTTGATGCGGCCTACGGCTCGGTGACCGTAAGCGACCCCAATACAATCGTGCTGGAGTCTCGGGGAGGGGAGTCACTGGGGAGCCCCACACCTGTATAGGAGGCTACAGTATGTTCACATTAAACATCCAAAAAGCTGATGATGTCATGACTTATGTCAGTCCATGTAATCAACCATCCACCATTGCCTCAAATATACCCACTGCCTCATGCTGATGTACAATGACTTTGTATTGATTCTGTGTAAACGCTCATGATAAACTGGTCCAAGGAATAGTTGAAATGCAAATGCAGCATCTGTTTACAGGGATTTTCTGCAGAAATTGTGTAGTCAATGGTCAAATTGGGTTTGTGATGGTTAACAAAAGAGAATACATTCCACAGCTTTGTCATTTTACTGCATGAAAACAGCAGCAATGGTGCTGAAATGTGATAACCCATGTAACGATGCATGGAGTGTGgtgctgttttgtgttttggatCTAAGCCTCTGTACTTTAAAAAAGCCTGAATGCAGGACTAATCCACCATGCTCCACGCCTTGGAAAAGGGTGGGGAAACTCCATGCCTATGCAGGATGCAGTCTGACCGCAGACAGACACTGGACCCCACAGACATTCTACATCTGCCCATGTCATTGCTGGCTGCTGAAGCATTATAACTGAAATCATGCAGTGGGTCAAAATTTATTACCACATGGTTGGTGAGCTTGGACATACTTTTGGACATTACAGCTGTAATATCACCTGTGCTGAATGTAGAACACTGGTATCAGAAGAAACTGAAGTACAGTGTCTTGCAAATGTTTCCAACCCTGTCTGTAGTCTTCAGGTTTTTCTGAATAACACATGACAGCAGGTTCCAGCTTGTATATTTATTGCGAACCTAAAGGAATAAGTTTTAAATGTAAGATGAATCTGATGACTTTAATTACATTTGCAAGGCACTGTGTAAGTAATGGAAATGGATTAAGTGCTTGTCTTGGGCTACACTGAAAACAATTATTCTGCACTATTCTGCACTCAGCCTGTGGGCTGAGTCTCAATTACAGTCTATAAAATCTGCACCAATAAATCTTTCTTCCAGTTTCTCACACAAGGGGCCACAGTAAAATATTTCAGGTTGTATTTCctctatatataattttcagttacatcaattcattattatcaGATTCTGATGCCTGGTAAAaatttttttagaaatgttgttttttttttacgtcagGTAGGGTGGGGATTTGGGGGGGTAACAATAATACTTATTACCCACAATGGGGGCCTCCATCTCCAAAACGgtgactttacaggagaaggccATTTTGAGTGTATTCCATGTAatttttctattggtctatttatttacagttatttacaCAGTGTACAGAGCAGCTAGATGTGCACACAATAGAGATAactaaaacagacaaaatagAGATACatgattttcattggacagcagatCAGCATTATACATTCGATTCTTGTTCTTCAGACATTCTGAAAAATATATCTGCTACCTGGTCGAGACAAGTGTATTAATTTTTAGTCTTTGCACAGTTCTACTATTGCAGATCTGTTCGAATTTGTAAGTTGATATTATGCAAATcaaaaatgctgatttaataGACATACAGAGAGCCGTTTAAAgcaaattacataaaaatgtgtttttaaagtgaGTGTGCCAAGTAACTACTGTGAAAAAAGGTCAGCTTTAAAAAGCCTAAACACTGAGATCAATAAAATCAGTCACAGAACAAGACTTGCTTCTCCATcaatcatttaaatgtaaaattgttgAGAAAAAGTATATCAAATCAGATGCCACTGTTATGAATAAACTTACAGtgtaagtgtt

Function

symbol description
slc10a4 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

NR:

description
PREDICTED: sodium/bile acid cotransporter 4

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
K14344 SLC10A4; solute carrier family 10 (sodium/bile acid cotransporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664317.1 True 2872 mRNA 0.48 3 63123306 63131100

Neighbor

gene id symbol gene type direction distance location
slain2 slain2 coding upstream 11647 63087980 ~ 63111659 (+)
anapc4 anapc4,LOC107665412,LOC107683992 coding upstream 36324 63066520 ~ 63086982 (+)
ttr ttr coding upstream 182432 62935685 ~ 62940874 (+)
LOC103046397 NA coding upstream 197501 62909091 ~ 62925805 (+)
LOC103046101 LOC108414576,LOC108416204 coding upstream 215790 62888868 ~ 62907516 (+)
zar1 zar1 coding downstream 1860 63132960 ~ 63134737 (+)
ociad1 NA coding downstream 159034 63290134 ~ 63295723 (+)
ociad2 ociad2 coding downstream 176849 63307949 ~ 63314957 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 187552 63318652 ~ 63334868 (+)
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding downstream 234574 63365674 ~ 63379522 (+)
G30280 NA non-coding upstream 5891 63116862 ~ 63117415 (+)
G30168 NA non-coding upstream 318552 62803591 ~ 62804754 (+)
G30138 NA non-coding upstream 384394 62737567 ~ 62738912 (+)
G30130 NA non-coding upstream 471369 62649364 ~ 62651937 (+)
G30125 NA non-coding upstream 535250 62587723 ~ 62588056 (+)
G30311 NA non-coding downstream 8198 63139298 ~ 63142668 (+)
G30314 NA non-coding downstream 18566 63149666 ~ 63150215 (+)
G30335 NA non-coding downstream 132850 63263950 ~ 63288134 (+)
LOC111191941 NA non-coding downstream 166763 63297863 ~ 63298732 (+)
G30383 NA non-coding downstream 302731 63433831 ~ 63435982 (+)
LOC103035278 NA other upstream 192173 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 270018 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1187223 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2598255 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 3524974 59586709 ~ 59598332 (+)
G30362 NA other downstream 204634 63335734 ~ 63345693 (+)
kit kit other downstream 1100144 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1891319 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1946680 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1967402 65098502 ~ 65098573 (+)

Expression


Co-expression Network