G60437


Basic Information

Item Value
gene id G60437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15548161 ~ 15548460 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU68790
CAAGTTATGAAGTAAAATATGTAGCTTACGCCAGGGTTTGGGTTCACTAGTTATGAAGTAAAATATGTAGCTTCCGCCAGACCGCCTTCCGTATTGAAGATATGAAGAAAGTGTAAACTGGTGTCACGTCAGTTACACTTTTTCCGTAAGTTGAATAGAGAAGGCGTAGGACGTACCGTAAGCTTTGTGAACTGCAAGAGTTTTACACTTTCTGCATACGTTAAATACGGAAGGCGGCTCATGCGGAAGCTAGATGTTTTACTTCATAACTTGTTAAATATGGATTTTTTTTTTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU68790 True 300 lncRNA 0.38 1 15548161 15548460

Neighbor

gene id symbol gene type direction distance location
CI01000009_15483720_15484321 NA coding downstream 63840 15483709 ~ 15484321 (-)
CI01000009_15318811_15390382 TNS1 coding downstream 157779 15318811 ~ 15390382 (-)
CI01000009_15301177_15304489 NA coding downstream 243661 15301097 ~ 15304500 (-)
CI01000009_15229965_15235247 NA coding downstream 312633 15229657 ~ 15235528 (-)
CI01000009_14974529_14974816 NA coding downstream 572741 14974042 ~ 14975420 (-)
CI01000009_15654061_15662554 ARPC2 coding upstream 105300 15653760 ~ 15663026 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding upstream 144534 15692994 ~ 15694629 (-)
CI01000009_15716557_15721525 KLHL23 coding upstream 168017 15716477 ~ 15721596 (-)
CI01000009_15726357_15736168 PHGDH coding upstream 177685 15726145 ~ 15736168 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding upstream 235620 15784080 ~ 15789896 (-)
CI01000009_15504401_15585060 NA non-coding downstream 37809 15503406 ~ 15585829 (-)
G60370 NA non-coding downstream 227876 15311531 ~ 15320285 (-)
G60430 NA non-coding downstream 255476 15292447 ~ 15292685 (-)
G60426 NA non-coding downstream 259767 15288178 ~ 15288394 (-)
G60422 NA non-coding downstream 263181 15284744 ~ 15284980 (-)
G60439 NA non-coding upstream 1122 15549582 ~ 15549879 (-)
G60442 NA non-coding upstream 41197 15589657 ~ 15649377 (-)
G60468 NA non-coding upstream 159544 15708004 ~ 15712147 (-)
G60469 NA non-coding upstream 170102 15718562 ~ 15719161 (-)
G59941 NA other downstream 415658 15132104 ~ 15132503 (-)
G59811 NA other downstream 660697 14862397 ~ 14887464 (-)
G59490 NA other downstream 1510288 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 1569547 13975099 ~ 13978614 (-)

Expression


Co-expression Network