LOC103037884 (paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306)


Basic Information

Item Value
gene id LOC103037884
gene name paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64712173 ~ 64728301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664566.1
GGCAGAATCAGAAATCTAACAGAAGCCATTTCTAGGCTAGCTCAGAAACATGGAGCTCAGTGCAGAGGAGAAGAGGAGTGGTAGCAGAGAGGAGGACAGGCAGCAGCAGAGAGGAACAGCAGCCCACTGGAACGGGGGTGAGGTGAAGGCTCTGCTGGTAgtgtggagggagagagagggctgGGACGAGCCAGAGAGCAGAGCCAAGTACGAGGCCATCTCAAGCCGGTTGAGAGATTTTGGCATTATAAGGGATTGGCTTAGCTGCCAGACGCAAAGCAGAGCGATGGCTCTACCAGACTGGAGGCCTCCACCGCCCAAGGCACTGTCCGACAACAGGACGTTGCAGAGGTCTTACGAAATGTCCGAAGAACACGGCAGTCCCGCCAAGAGGAGAGATGGAGGAGCTTCCATCAGCACTTTTCAGGAGGgcATGGAGGGAGGGAGACACTGGTCTGACAAAGAGATTCGTGCTCTACTCGCCGTCTGGGCTGACCGAGAATTCCAGGGGCGTCTGCAGAGCACCCATCGCAACAGAGCCATCTTCCAAGAGATGGCCCGCCGCCTAGAGGTACAGCACGGCGTCGTGCGGGACTGGAGGCAGTGCCGCACCAAATACAAAAACCTCAAGTACGATTACAAAGTAAGCAAGGACCAGGGCCGCTTCATGCGCTTCTTTGCGGAGTTGGATGCAATACTACAGGGCAAGGTCATTGATGATGGCCTGGACGAGGATGACAATTTGCCCAGGGAAGGACCTGAGGGTGACCATGGCACTGGAAGGCTAGAACCTGGAGAAGACAACTACATAAAGATTGATGATGATGAAAGTTTGGCAGATATGCAGACAATAATCAACACAGGGTCTCATGCCCTCATCACAAAAGACACAGAAGGGTGTAGCACATCTCCATTGAGAAGAGCGGCATCAGATGACCCAAACGTGATTACAGTTCATGACTCAGGCCGGAACTGGACAGAAGAAGAGGTGGCAGCATTGCTGAACATCTGGGCAGAAGATGGGATACAGCAACAGCTCCAGGTTTCGACCCGAAACAAGGATGTGTTTGTGCAAATATCACGGCGGCTTCTTCAGCAGGGCGTGGAGAGGGACTGGAAGCAGTGTCGCACCAAATACAAGAACCTAAAATATCTTTATCGTTCTCTACAGAGAGGAAAGGCTGATATGGGAGACACTCGTCGCATTATGAAGTTTTACGAGCAGCTGGACAACATTCTGTCCAAGCCCAGCAGAGGCCTCTATGGGCCTGCTGGGATGTTCAGTCCTACCATGTTTGATGAGCATTCCTTTGAAGAAACTAATTCAAATGAAGACTCTGATGTGATTGCTGTTGAATTTGATCATCAGGCCATTGATGAGGCCATTTTGAGAGACTCCCCTGGCATAATCACAAGACTAATCCAAACTGGCAGTGCTTTAAAAATGTCAGTAGAGGACGCTGATGCTAAGTATGAAGAACGGGCTCAAGTTGATGGTATTTTGCTAAGGTCAGGCGACAGTGCAAAGACAGGATATGGTCATTCAAGCACAGCAGGAACATATGATGGAGGTCAGGAATTCAAAGTAAACAAAGAAGAAACGGAGACAACATTCATGGAAAGAGAGCATGCAATGtcaagcagaagaagaaaaagaaaagccaCAGATGAAGATTTTAGTCTGCCTAGTAAAAGATTTCATCAGAGCATGGATGATGGAGACAGCAGCACTGATTGGTCTGAGAATATTGACTATCAGTGCAAAGAAGAGCGGGATCCATACATTCCAATCATGGAAATCACTTCTGTGTGTTCAATGGCCTCAAACACTGTGACAGCTGAAAACTTGGGCATACGATTTGCTACAGAAATGGCGTCTGTAACCACAGATCTGAAACTCGGAAAGAAGCTGAACGAGGGAAAGACCAAGCAGATCTTCGAGCTCCCGGGCGAGCCCGGTCATGTTCTGGTTCAGTCCAAAGACCAAATCACGGCGGGCAACGCTGTGAGGAAAGACCAGATGGAGGGCAAGGCCGCGATTGCCAATAAGACCACCAGCTGTGTGTTTAAACTCCTGCAGGAGGCTGGCGTTAAGACTGCTTTTGTGAGGCAGCATTCAGACACAGCGTTCGTTGCCAGCCATTGTGAGATGATTCCCATCGAATGGGTCTGCAGGCGCATTGCCACAGGATCCTTCCTCAAGAGGAACCCAGGGGTCAAAGAAGGCTACCGCTTCTCACCACTGAAGTTGGAAATGTTTTTCAAGGATGATGCTAACAATGACCCACAGTGGTCAGAGGAGCAGCTGCTGGCAGCTAGCTTTGACTTGGCAGGTGTGTCCATTGGTCGCTGTGAGGTGGACATCATGAGCAAGAGCACAGTTGCTATCTTTGAAATACTGGAGAAGGCCTGGGCAACCCAGAACTGCACCCTTGTGGATATGAAGATTGAGTTTGGCATCAATGTGGCCACCAAGGAGGTTGTTCTGGCTGACGTGATTGACAATGACTCGTGGAGGCTGTGGCCTGCTGGAGATCGCAGCCAACAGAAAGACAAACAGGTTTACAGGGACCTAAAAGAGGTCACTCCTGAAGCTATGCAGATGGTGAAGAGGAACTTTGAATGGGTGTCTGAGCGAGTACAGCTGCTTCTGGAACCACAATCAAGTGGAAGGGTTGTAGTGCTGATGGGCTCGACTTCTGACATGGCTCACTGTGAGAGAATCCGCAAAGCCTGCAGCTCATACGGAATCCCCTGTCACCTTAGAGTCACTTCTGCGCACAAAGGCCCCGACGAGACTCTGCGTATCAAAGCTGAATATGAAGGTGATGGAGTTCCCACAATTTTTGTAGCTGTTGCTGGAAGGAGTAATGGTTTGGGTCCAGTGATGTCAGGAAACACAGCTTATCCTGTCATTAACTGCCCCCCTGTTACCCCTGACTGGGGTGCACAGGATGTCTGGTCATCTCTTCGTATGCCTAGTGGTCTCGGGTGCTCCACAGTTCTGTCTCCCGATGCTGCTGCCCAGCATGCTGCTCAAATCCTCGGCCTCACGGACCACCTGATCTGGGCCAAACTGCGAGCCTCCATGCTGAACACCTGGACCTCCCTAAAGCAGGCTGACAAGAAGCTTCAGCAGTGCAGCATTTAAACCAACATCATTGCTCTTCAAACTCAATTCCATTCCAGATGTTTTAATCTTTCCATTGCTCACCTGTACTCACAGCTGTCATTTATTGTTGATGGAAGCTTGTGAATAAATTCAGTGCCTTTATTAACAGGTTCAATTTTTCATCTGTACATGCCAAGAATAAATAGATTCATAGAAAAC
>XM_022664573.1
atattttttttttacattaaacccAAATCACACAGCTGGAACTGGGGGTCGCTGGTGGCTTTAAACGTGTCTCTTGTTATTTATCTCACTTTAAATTAGTACAACTCCAGCTTAAGTTGGCTCACTGGACTTTTCTctgactgtgattaaaaacacgTTGTTTGCTCTGAAGAAAAAGAGAACGATATTCCCCACGTGGTGAAGAAGATGGCGGCGTGACTCTGATTGGTGTTTATAAATCGGCAGAGTGTCGTAATCGGTGTTCACAATACTTAAAACAGTGCTggctctctttctcctcctctcctctcccaaACTTTCCTCCACTGCTCCTCCAGCGGTCTGTCTACTCCTCCTCACAGGGCATACGATTTGCTACAGAAATGGCGTCTGTAACCACAGATCTGAAACTCGGAAAGAAGCTGAACGAGGGAAAGACCAAGCAGATCTTCGAGCTCCCGGGCGAGCCCGGTCATGTTCTGGTTCAGTCCAAAGACCAAATCACGGCGGGCAACGCTGTGAGGAAAGACCAGATGGAGGGCAAGGCCGCGATTGCCAATAAGACCACCAGCTGTGTGTTTAAACTCCTGCAGGAGGCTGGCGTTAAGACTGCTTTTGTGAGGCAGCATTCAGACACAGCGTTCGTTGCCAGCCATTGTGAGATGATTCCCATCGAATGGGTCTGCAGGCGCATTGCCACAGGATCCTTCCTCAAGAGGAACCCAGGGGTCAAAGAAGGCTACCGCTTCTCACCACTGAAGTTGGAAATGTTTTTCAAGGATGATGCTAACAATGACCCACAGTGGTCAGAGGAGCAGCTGCTGGCAGCTAGCTTTGACTTGGCAGGTGTGTCCATTGGTCGCTGTGAGGTGGACATCATGAGCAAGAGCACAGTTGCTATCTTTGAAATACTGGAGAAGGCCTGGGCAACCCAGAACTGCACCCTTGTGGATATGAAGATTGAGTTTGGCATCAATGTGGCCACCAAGGAGGTTGTTCTGGCTGACGTGATTGACAATGACTCGTGGAGGCTGTGGCCTGCTGGAGATCGCAGCCAACAGAAAGACAAACAGGTTTACAGGGACCTAAAAGAGGTCACTCCTGAAGCTATGCAGATGGTGAAGAGGAACTTTGAATGGGTGTCTGAGCGAGTACAGCTGCTTCTGGAACCACAATCAAGTGGAAGGGTTGTAGTGCTGATGGGCTCGACTTCTGACATGGCTCACTGTGAGAGAATCCGCAAAGCCTGCAGCTCATACGGAATCCCCTGTCACCTTAGAGTCACTTCTGCGCACAAAGGCCCCGACGAGACTCTGCGTATCAAAGCTGAATATGAAGGTGATGGAGTTCCCACAATTTTTGTAGCTGTTGCTGGAAGGAGTAATGGTTTGGGTCCAGTGATGTCAGGAAACACAGCTTATCCTGTCATTAACTGCCCCCCTGTTACCCCTGACTGGGGTGCACAGGATGTCTGGTCATCTCTTCGTATGCCTAGTGGTCTCGGGTGCTCCACAGTTCTGTCTCCCGATGCTGCTGCCCAGCATGCTGCTCAAATCCTCGGCCTCACGGACCACCTGATCTGGGCCAAACTGCGAGCCTCCATGCTGAACACCTGGACCTCCCTAAAGCAGGCTGACAAGAAGCTTCAGCAGTGCAGCATTTAAACCAACATCATTGCTCTTCAAACTCAATTCCATTCCAGATGTTTTAATCTTTCCATTGCTCACCTGTACTCACAGCTGTCATTTATTGTTGATGGAAGCTTGTGAATAAATTCAGTGCCTTTATTAACAGGTTCAATTTTTCATCTGTACATGCCAAGAATAAATAGATTCATA

Function

symbol description
paics Predicted to enable ATP binding activity; carboxy-lyase activity; and phosphoribosylaminoimidazolesuccinocarboxamide synthase activity. Acts upstream of or within chordate embryonic development; pigmentation; and retina development in camera-type eye. Predicted to be active in cytosol. Is expressed in several structures, including eye; immature eye; midbrain; neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human PAICS (phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase).

NR:

description
PREDICTED: uncharacterized protein LOC108415209 isoform X1

GO:

id name namespace
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity molecular_function

KEGG:

id description
K01587 PAICS; phosphoribosylaminoimidazole carboxylase / phosphoribosylaminoimidazole-succinocarboxamide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664566.1 True 3331 mRNA 0.50 15 64712173 64728301
XM_022664573.1 False 1838 mRNA 0.49 10 64719450 64728295

Neighbor

gene id symbol gene type direction distance location
LOC103038194 NA coding upstream 9633 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 38662 64629173 ~ 64673511 (+)
chst14 chst14,LOC107665414 coding upstream 109535 64591657 ~ 64602638 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding upstream 122555 64572370 ~ 64589618 (+)
LOC103022915 NA coding upstream 293730 64412269 ~ 64418443 (+)
LOC103042444 NA coding downstream 3358 64731659 ~ 64742240 (+)
LOC103042125 NA coding downstream 14353 64742654 ~ 64749709 (+)
LOC103041822 NA coding downstream 74923 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 98394 64826695 ~ 64834077 (+)
LOC103041527 LOC103041527 coding downstream 120347 64848648 ~ 64856825 (+)
G30617 cep135 non-coding upstream 89835 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 98065 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 166051 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 168752 64542115 ~ 64543421 (+)
G30587 NA non-coding upstream 182010 64529930 ~ 64530163 (+)
G30644 NA non-coding downstream 1763 64730064 ~ 64822659 (+)
G30652 NA non-coding downstream 23932 64752233 ~ 64774978 (+)
G30653 NA non-coding downstream 25225 64753526 ~ 64755851 (+)
G30664 NA non-coding downstream 60820 64789121 ~ 64791799 (+)
G30643 NA non-coding downstream 83078 64811379 ~ 64824149 (+)
kit kit other upstream 442478 64231244 ~ 64269695 (+)
G30362 NA other upstream 1366480 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1781040 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1858885 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2776090 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 294118 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 349479 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 370201 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 370990 65099291 ~ 65099362 (+)
G31000 NA other downstream 1100480 65828781 ~ 65837365 (+)

Expression


Co-expression Network