ppat (ppat,LOC107737308,LOC107683925,LOC107556156,LOC107721366,LOC107665312)


Basic Information

Item Value
gene id ppat
gene name ppat,LOC107737308,LOC107683925,LOC107556156,LOC107721366,LOC107665312
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64702500 ~ 64719032 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664582.1
gctcccaataaaaaaaacttaaggaagtatcatgaaaaacatgaaagcattaaaaaaaatgttggtgggCGCATGCGCAGAGCCGCTAAGTAGcacgtatcgatgggtagcataactcgacacaACACCGGCGCCGGGCGGCGTGGTACAGCAGCACGTGCTCGGACTGAGCGATTTTGAGGCGGCGTGGGGAGAGCCCGAGCTCAGGGAGTCTGAACTCCAGGAGAGCGCGAGGacacgcagcagcagcagcgggcaTGGAGTTTGAGGAGTCCGGTATCGGAGAGGAGTGCGGCGTGTTCGGCTGTGTGGCAGCGGGAGAGTGGCCGACCCAGCTGGAAGTGGCGCAGGTGCTGACCCTGGGTCTGGTGGCCTTACAGCACAGagGTCAGGAGAGTGCGGGAATTGTTACGAGTAATGGGTCCACTCCACCCACATACACCACCCTTAAgGGCATGGGATTAGTGAGCACAGCTTTTAAACCGGAGGACTTGCTGAAGCTGAGATATGGTAATTTGGGGATTGGGCACACTCGATATTCCACCACAGGAATATCAGAGCTACAGAACTGTCAGCCATTTGTGGTGGACACCCTGCATGGAAAGATTGCTGTGGCACACAACGGAGAACTTGTCAACGCTGCCGCTTTGCGCAAGAAGGTTATGAGACACGGTGTCGGTCTGTCCACCAGCTCAGACAGCGAGCTCATCACACAGCTACTTGCTCTGACTCCACCCATGGAGGAGGATGATACTCCTGATTGGGTAGCACGcattaagaATTTGATGACTGAAACGCCTACTTCCTACTCCCTGCTGGTAATGCACAAAGATGTGATCTATGCCGTGCGAGACCCGTATGGCAATAGACCTCTCAGCATCGGCCGTCTGGTGCCAATTTCAAAACTACACTCAGGCAGCAGTGAGGCAGACACCGAAGGCTGGGTGGTTTCCTCAGAGTCCTGCAGTTTCCAGTCCATCGGTGCAAAGTATTACCGTGAAGTACAGCCAGGAGAAATTGTGCAGATCTCCAAACATGGCATCAAGAGCCTGAGTGTCGGCCCTCGCCCAGAGGGAGACCCCCCTGCCTTCTGCATATTTGAATATGTTTACTTTGCCAGACCAGACTCCATATTTGAAGGTCAGATGGTGTACACAGTCCGGCAGCGCTGTGGGCGCCAGCTTGCCATCGAGGCCCCTACTGAGGCAGATGTGGTCAGCACAGTTCCTGAGTCAGCGACTCCAGCTGCTTTAGGATATGCACAAGAGTCTGGCCTCCCTTATGTAGAGGTCCTGTGCAAAAACCGCTATGTTGGGAGAACTTTCATTCAGCCAAACACTCGTTTACGTCAGCTTGGCGTGGCCAAGAAATTTGGAGCATTGACGGACAACTTTGCTGGCAAAAGAGTGGTGCTAATTGATGATTCTATTGTGAGAGGCAACACCATCTCACCTATTATTAAACTGCTCAAGGAGGCTGGAGCAATAGAGGTCCACATTCGAGTAGCATCTCCTCCAATTCGATTCCCCTGCTACATGGGCATCAACATCCCTACCAAAGAGGAGCTGATTGCTAATAAGCCGGAGTTTGAGGACATTGCAGGCTACATTGGAGCTGCCAGTGTGCGTTATTTGACTGTTGAAGGCCTGGTTGCTGCGGTGCAGAGTGGGATTGAAGGTTGTGGGGAGAAGAAAGAGATCAGCCCCAGGACCAAGACCAGCAAAAGAGTTGGTCACTGCACGGCCTGCCTGACGGGCAAATACCCTGTTGAACTGGAGTGGTGATGAAATGGACTGTAACACCATCGTCAACATTCCACATTAAAGTCCAGAGTATCTGGCACGTGGCAATCGTCTTCACATGGTGTAGATACATTAGGTTTACTGTACACTGTGGTGTTATGTTTATCTACAAGTAATTTACCAGCTCTGTTTTAACAGGGTGTTCATGTTCAAAAACATCTGCCATTTTTAGTATAAACCTTACATATTTAAGTTCACTACATAACAATTTTGCCATCAGTAGAAAGTCAgttttattcaattaaattcaatcGTTCACaatttatgctggaaaatcttGAATGACTGACTTGATAACCGAACTTTCCATGATGCTTGCAGATTGTAAAGTTACATTTAACCCTTAAATTCCCATGGAAAGTAAAGTTCATATGTAAAGATTAACATGTGCTTTTCATATACTCACATTTAATTGATCCTCTGATGACTAAAATGCATTATGGTGCCAAAGGTTTCGAATTGCATTTCCCAACTGTTACACCCGACAGAGTCTGTATCTGAGCAGTAGAGACTCTTCTGTTCTGAAAATCGCGCACAAATAATACccaacacactgtaaaaaggtgaaatatttttgttcttctttgtctttgcattattcccTCCCTCTTATTGCATTGTGCTCATGTAAGAATTGTGGAAACTGTTGCAGCAGAGGCTGATAAAACCTGGAGCAATAAAAAGTCCTTTGTTCTCCAGTTGTATTTGCCAGTAAAAAGTATGTGTGAAACAAGCAAAACCATTTATTAAAATTTCACATTTCAACATA

Function

symbol description
ppat Predicted to enable amidophosphoribosyltransferase activity. Predicted to be involved in purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and purine nucleobase biosynthetic process. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human PPAT (phosphoribosyl pyrophosphate amidotransferase).

NR:

description
amidophosphoribosyltransferase isoform X1

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664582.1 True 2571 mRNA 0.47 11 64702500 64719032

Neighbor

gene id symbol gene type direction distance location
aasdh NA coding downstream 7586 64673515 ~ 64694914 (-)
cep135 cep135 coding downstream 76106 64606371 ~ 64626394 (-)
nmu nmu coding downstream 175832 64506959 ~ 64526668 (-)
clock clock,clocka coding downstream 201824 64427104 ~ 64500676 (-)
kdr kdr coding downstream 331936 64335713 ~ 64370564 (-)
LOC103037239 NA coding upstream 33200 64752232 ~ 64762149 (-)
LOC103035690 NA coding upstream 121113 64840145 ~ 64848224 (-)
hook1 hook1,LOC107665311 coding upstream 173352 64892384 ~ 64915969 (-)
pfas pfas,LOC107593806,LOC107737373,LOC107556148,LOC107665308,LOC107737297 coding upstream 216033 64935065 ~ 64956229 (-)
ipo13 ipo13,LOC107697216,LOC107593276,LOC107691006,LOC107745904 coding upstream 242049 64961081 ~ 65019235 (-)
G30598 exoc1 non-coding downstream 111745 64587453 ~ 64590755 (-)
G30608 LOC107721360,LOC107665383,LOC107683916,LOC107556159 non-coding downstream 119805 64580374 ~ 64582695 (-)
LOC111191943 NA non-coding downstream 131220 64567576 ~ 64571280 (-)
G30597 NA non-coding downstream 174460 64527785 ~ 64528040 (-)
G30581 NA non-coding downstream 236909 64464239 ~ 64465591 (-)
G30804 NA non-coding upstream 1863 64720895 ~ 64832398 (-)
G30799 LOC108415209,LOC108257759,LOC107721365,LOC107555752,LOC107683924,LOC107556158 non-coding upstream 3475 64722507 ~ 64736326 (-)
G30806 NA non-coding upstream 11031 64730063 ~ 64822943 (-)
G30817 NA non-coding upstream 51669 64770701 ~ 64774213 (-)
G30830 NA non-coding upstream 92354 64811386 ~ 64824124 (-)
scfd2 scfd2 other downstream 938827 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 1217479 63433792 ~ 63485021 (-)
G30376 NA other downstream 1367654 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 1414392 63136951 ~ 63288108 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 2811771 61831841 ~ 61890729 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 55652 64774684 ~ 64799176 (-)
trnad-guc_7 NA other upstream 374046 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 378570 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 2143433 66862465 ~ 67044318 (-)
G31424 NA other upstream 2704840 67423872 ~ 67432424 (-)

Expression


Co-expression Network