LOC111190912


Basic Information

Item Value
gene id LOC111190912
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64826695 ~ 64834077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664626.1
ACTCAGAGTGTTATATAATCACACAAAGACGCAGCACACTCTGACTACCAGGATCTTCACAAACTCCAACCATGCTCTTGCAAAACTTACTGGAATACTTTGATTTGACTTTCTGGCTGATatgcctttttctttttcttctgtttacTGATATTATAAGGAATATGAATCCACCAAATTTCCCACCAGGTCCCTGGCGTCCACCTTTCGTGGGAAACGTCTTTACTGGAGGTGACTACAAAACCATAGACAAGCTTTACAAGCAGTATGGGGATGTGTTCAGTGTGAGATGGGGCAGTAGCAAAACTGTGTACATCTGTGGATACAAAATGTTGAAGGAGGCTCTCGTCACTCAGTTGGACAGCTTTATTGAGCGCCCAGTTATTCCTCTGTTTGACAAAATCTATAACGGGCGAAGTGTGTCTCTCAGTAATGGGTACATGTGGAAGATGCAGAGAAAGTTTATCATCACTCACCTGCGATACGTTGGTGAGGCAAAGAAGACCCTTGAGCTGAGCATCCAGCAGGAGAGCGTCTGCCTGTGTGAGGTCTTTAAAGAGGAAAAGCGTCCCTTTGATCCCCAGTTTTACCTCATCACTGCTGTTTCAAACATAATCTCAGCTCTAATGTTTGGGCATCGCTTTGACTACCATGACGAAAGCTATCTTAAAATTCAGCGTACACTTGTTGAAGCTGTCTCACTGGCAGGCTCTTCTCATGCTAATCTCTACAATATCTTCCCTTTcctttttaattacatttgtgGGCCACATCAGAAAGTGTTTGCAAACTATTTTGCGGTCCTTGATTTTGTGAAAGAAGAGGTCAGAAAGCACAAGGAGAATTGGGATCCATCAGACCCACGGGATTACATTGATGCTTATCTGGCGGAGATGGAGAAGAAAAAGAGTGACCCTGAAGCTGGTTTTGACCTGGAGACATTAGCTTGTGCCACAATGGACATGTTTGAGGCTGGAACAGAAACCTTGGCCACTACAATGCGCTGGGCTCTGCTTTTCCTGATGAAATTTCCTGAGATACAGAAAAAGGTGCAGGCAGAGATTGACAGTGTGATTGGACAGTCACGCCAACCCACCTTGGCAGACAGGCCCAACATGCCGTACACTGAAGCTGTCATCCACGAGACGCAGAGGATGGGCAACATTCTTCCCTTGGGTTTTCCTAGAAGAGCCTGTAAGGACATAACACTGGGGGGATACTTCATACCAAAGGGCACACCTATGAATACAAACCTGTCATCTGTGCTTACTGACAAAAATGAGTGGGAAACACCAGACATCTTCAACCCTGGACACTTCCTTGATGAGCAAGGTCAATTCCGCAAGAGAGACGCCTTCATGCCTTTTTCAGCAGGTAAGAGAGTGTGTCTAGGTGAGCCTCTGGCACGCATGGAGCTCTTCTTATTTACCACCTCTCTGCTGCAACGCTTCACTTTCTCTCCTGGCTCAGGAGAGGAGCTGAACCTGGAGGGTCAGCTGGGCTTCACATACACCCCCAGGCCTTACCGCATGTGTGTGATTCCACGCTAAGGACCAGAGAAATAAGATAATACTCTAATACATGAGAATGTGGTACAgaatattaacaataaatatgtttaaacatAGTTGAGCTGCTTAAAATCTAGCATTATGatatttaattcaaatataaaaaacatttaaactcaTGATGCAAgacgtcactgtccaatgaaaaacacgtatccatttttgtcaatttttagtttactgcataatttgaagACACAGATTATGTTACACTGTGTATGACACTGTCTTGCAACAGTAGAAATTTGCTAAAGGACCTGAAATCAactatttttacactgacttccattaaaggttaaaaaggtgttgtttctctcctgtaaagttgctgatgatacatgtttttcattgggaGCGACAAAGGAGGTTCTAATCAAGGAACACATGCGCAGTGAAGCACTTGTGAGCATtataaacattgcaacatgacaatTTGGGTTTTCAgaatgtacaattttttttatgaatgcaTGTTCATGCAaatttttaagtattaatttttaatgaCTAGGCAAGCAACATGAGAATAAAGGCTGCAGTATGTTCATATAGTTTACTCTGCATACAAATa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664626.1 True 2142 mRNA 0.42 9 64826695 64834077

Neighbor

gene id symbol gene type direction distance location
LOC103041822 NA coding upstream 16362 64803224 ~ 64810333 (+)
LOC103042125 NA coding upstream 76986 64742654 ~ 64749709 (+)
LOC103042444 NA coding upstream 84455 64731659 ~ 64742240 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding upstream 98394 64712173 ~ 64728301 (+)
LOC103038194 NA coding upstream 124155 64694962 ~ 64702540 (+)
LOC103041527 LOC103041527 coding downstream 14571 64848648 ~ 64856825 (+)
LOC103036008 LOC103036008,LOC108415307 coding downstream 25253 64859330 ~ 64868413 (+)
LOC103035382 LOC108415267 coding downstream 35774 64869851 ~ 64876715 (+)
LOC103035066 NA coding downstream 46861 64880938 ~ 64890653 (+)
LOC103034427 NA coding downstream 92458 64926535 ~ 64934468 (+)
G30643 NA non-coding upstream 2546 64811379 ~ 64824149 (+)
G30644 NA non-coding upstream 4036 64730064 ~ 64822659 (+)
G30664 NA non-coding upstream 34896 64789121 ~ 64791799 (+)
G30652 NA non-coding upstream 51717 64752233 ~ 64774978 (+)
G30653 NA non-coding upstream 70844 64753526 ~ 64755851 (+)
G30683 NA non-coding downstream 58321 64892398 ~ 64909454 (+)
LOC111190945 NA non-coding downstream 130235 64964312 ~ 64982401 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding downstream 150401 64984478 ~ 64987306 (+)
G30718 NA non-coding downstream 216747 65050824 ~ 65159264 (+)
G30722 LOC108415433 non-coding downstream 223442 65057519 ~ 65059450 (+)
kit kit other upstream 557000 64231244 ~ 64269695 (+)
G30362 NA other upstream 1481002 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1895562 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1973407 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2890612 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 188342 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 243703 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 264425 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 265214 65099291 ~ 65099362 (+)
G31000 NA other downstream 994704 65828781 ~ 65837365 (+)

Expression


Co-expression Network