hook1 (hook1,LOC107665311)


Basic Information

Item Value
gene id hook1
gene name hook1,LOC107665311
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64892384 ~ 64915969 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664663.1
aaacgcgAACGCCTCCAGGTGAGGTCAAATGCAGTGGGAAAGGGGAGCGCTTTGTTGACAGGTGGACGGAAATATCTGCCGGACggcggaaagagagagagtcatgGAGTTGAACAAAACGGTGCTGTGTGAGAGCCTCATCGTTTGGCTGCAGACTTTTAACACTACAGCACCATGTAAGACAGTGAACGATCTCACCACAGGTGCGGCCATGGCCCAGGCTTTACACCAgataGATCCATCCTGGTTCAGTGAGAACTGGCTCGCACGTATTAAAGAAGATGTAGGTGATAATATGAGGCTCAAGGTGAACAACTTGAAAAAGATCCTACAGATCATTGTGGATTACTACAATGAGGTTCTGAATCAGCAGATCTCAGGTTTCACTCTGCCTGATCTGGTGCGTGTGGCTGAGCACTCTGATCCGGTGGAGCTGGGGCGCCTCCTGCAGCTCATCCTGGGCTGTGCAGTCAAATGTGACCGGAAACAAGAGTACATCCAGATCATAATGACCCTGGAGGAGTCTGTGCAGCATGTAGTGATGACGGCCATTCAGGAGCTGATGAGTAAAGAGTCCAAACCCCATTTTGGAACAGAACTGGTTGGGGATGTTGATCAACAGCTGAAAAAAGCTCTGGAAGATTTGTCAGGAGTGATGGCGGAAAAAGAAGAGCTGGCACAGCGCTGTCAAGAGCTGGACATCCAGGTGGCAGTTCTGCAGGAAGAGCGCAACAGCCTCTTAGCAGAGAACGATGTTCTGACAGACCGAGCCAATCAACTGGACACGTTTGATGATCCCAGCACTCCATCAGGGAAGAAACATAGCCAGCTCCAGCTGCAGCTAGAACAGCTCCAGGAGGAGAACTTCAGACTGGAGGCAGCTAAGGATGATTACCGTATTCACTGTGAGGAGCTGGAGAAGCAGCTGGTGGAGGTTCAGCACCGAAACGATGAGCTCACCAGCCTGGCTGAGGAATCTCGCGCACTGAAGGATGAGCTGGACATTCTGAGgagCTGCTCTGACCGGGCGGTGAAGTTGGAGGCATCTGTGGAGACGTACAGGAAGAAATTGGAGGACTTAGGTGACCTGAGGAGGCAGGTGAAGGtgctggaggagaagaacatgactTATATGCACAATACTGTCAGTCTGGAGGAGGAGCTCCGGAAGGCCAACGCTGCACGAGCCCAGCTAGAGACTTATAAAAGACAGgtcCAGGAGCTTCACAGGAAGTTGTCCGAGGAGACACGCAGGGCTGATAATTTGGCCTTTGAGATGAAGAAGTTTGAGGAAAAGTATGAAACCCTAGTGAAGGAGAAGGAGAGAGTCATCATTGAGCGGGACTCTCTAAAAGAGACCAATGAGGAGCTGAGATGTACACAAGCTCAGCAAGACCAGCTTCTACAAGCAGGAATGTTTAAAACTGGGAGTCCAAGCCATGACAACTTGGCAGCTGAGATGTTGCCTATTGAATACAgGGAGAAGTTTATTCGTCTGCAGCATGAGAATAAGATGCTGCGTGTGCAGCAAGAGGACTCAGAGAATGAGCGCATCACTGAGCTGCAGGTCCAGTTGGAGGAGGCGCGGCGTGCACGCAGTGAGCTGGACACTGAGAACAGGTTAAACAGGGAGAGGGTCAGTGAACTGCAGCAGCAGGTTGAAGACCTACAGAAAGCACTGCAGACACAGGGAGCCAAACCTGAAGATtctCATCTGAAGAGGAAGCTAGATGCTCATAtGGTGCAGCTGAATGCTGCACAAGATGAGATCATGAGGAAGAAAGAGTTACTGGAGGATCTACAGCCAGACGCAACTCAAACCTctCTGAAAATGGATGAGCTGATGGCGGCTCTGAAGAAGAAAGATGATGACATGCGAGCGATGGAGGAGAGATACAAAATGTACCTGGAGAAAGCACGCAATGTGATCCGTGCACTAGACCCTAAACTGAACCCAGCCTCAGCCGAGATCCAATCCCTGAAAGTCCAGCTATtagagagggagaagagagTTTCTGCTTTGGAGagagagtgtgagcaAGCCAAGCTGCGGGAATATGAGGAGAAACTCATTGTGACTGCATGGTACAATAAGagcctgaATTTCCAGAAGATGGCGATCGAGTCTCGGCTAAGTGGCCGTTCTAACTCTCTGGTGCCGCCCGGTCAGTCCTTCCTTGCCCAGCAACGTCAGGTGACCAACGCCCGGCGCACAATGTCGATCAATGTGCCTGCTACTTCCACTAAGTAATGAAGACTTTGTCCCCTTTCCTATCTCCCCGTACCTTCTTTACCCCTCCCCTACTCCTCAATCACACACTTAAGTGACCTTAAGCACACTACTGAATAAAGGGACAAGCATGCCATAATGTGAATAATAGCACTTAAAAAACCTGTTTCACTCCCTCATATGTACACAAACTCAAATGCAAGAAACAAGCAAGCACAGGTTCAGCAACCCCTCAAAAACTCTACACTCAGTGAGCACTCTCCTTCATAAATCATTCTTTAGGACAGAATGGATTGGTGTCtgaatgtattttgtttaagcACTGAGGCTTTACTTTGTGAAAGACTAATTAGGagatgtgtgtgttgtttgctTGGTGCCGTACGTGTGTTTATATATCATATGAGAAGGACTTAAAGGGCAGCATGCATGCTAAAGGCTTCCATTGGTATTCTATGCAGCCGGCTGACGTGTACTTCTGTAAGTATGTATAGTACagttgtactgtatgtatgtatatgtagaGACATGTGCTTGTTGTATCATAGACCTGAAATCAGCATTCCTTTTTGTCTCTCCACATCTTCGCATGCATTTTCACAATCAGCTACAttaacagataataacaaagcTTCAGGACAAAGGCCTATTTGGTGCTggacaccaaaaaaaaacattttttctacGACAAAATCTTTTCATACAATTGaatacaaaaaagtaaagagTAACGCGTCTTCAAATAAAGAAACTGAGAGTCTGGTTGCTGCAGCCATTCTATAATCAACTGGAGCTTTGAAGACATTTGAAGTATTtcttttatacagtaatttaCTGTGATTAATCTCTTGCATGCTCTTGTAAAAGCAAAACAGCAGACAGGCATTTACTGTCCACTGAGCATTTGCTGTCTGGCTTCAGCCCATAAAGGCCACAGATATCAGGAATAAATCACCAGCTTTTGGTCATAGTAAACCCAGCCAAGCCTTCTTTTATAGGGTGAAATGCTGTGACCATTTTTTGGAATGGCCTTTTTCAAAAAGGGTGTTTCTCGAAAATCTCAACCTTTGTAATAGCCAGTGAATCATCCATAGCTGCAGTGTAGGCTTAGAATGGCTGTACATTGTGATAATCTGCCCTGTGTTAGGTCTAAAGAATTTGGGGCTGTTAGATTCAAAATgtgatttgtttaatttatgttggAACACAGTTGGGTATCTTTAGGATCAGGCTAAACCTAATGGTAAGGGTTATTTACAGATTTCATTTTGTCGGGGGAAAAAGGCTTTGTACCATGAAATATGTGATAGAGGAACTTTAAATGACTGTAAGAACACATGaaatgctaattaaaaaaaggcttttaaagttttgactttatttaaaaagtgtcttTGTCAAAGATGAAGCATATTAAAGATGGAATCTCTGGAATATTCGATGTATATGTAAAGCTTTTGTTTTCAtgtacaaataattaaaaataaacactgtaattacaagt

Function

symbol description
hook1 Predicted to enable dynein light intermediate chain binding activity and microtubule binding activity. Predicted to be involved in several processes, including cytoplasmic microtubule organization; early endosome to late endosome transport; and endosome to lysosome transport. Predicted to act upstream of or within protein transport. Predicted to be located in microtubule. Predicted to be part of FHF complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human HOOK1 (hook microtubule tethering protein 1).

NR:

description
protein Hook homolog 1-like

GO:

id name namespace
GO:0007032 endosome organization biological_process
GO:0007040 lysosome organization biological_process
GO:0015031 protein transport biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0045022 early endosome to late endosome transport biological_process
GO:0005874 microtubule cellular_component
GO:0070695 FHF complex cellular_component

KEGG:

id description
K16612 HOOK1; protein HOOK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664663.1 True 3734 mRNA 0.45 22 64892384 64915969

Neighbor

gene id symbol gene type direction distance location
LOC103035690 NA coding downstream 44160 64840145 ~ 64848224 (-)
LOC103037239 NA coding downstream 130235 64752232 ~ 64762149 (-)
ppat ppat,LOC107737308,LOC107683925,LOC107556156,LOC107721366,LOC107665312 coding downstream 173352 64702500 ~ 64719032 (-)
aasdh NA coding downstream 197470 64673515 ~ 64694914 (-)
cep135 cep135 coding downstream 265990 64606371 ~ 64626394 (-)
pfas pfas,LOC107593806,LOC107737373,LOC107556148,LOC107665308,LOC107737297 coding upstream 19096 64935065 ~ 64956229 (-)
ipo13 ipo13,LOC107697216,LOC107593276,LOC107691006,LOC107745904 coding upstream 45112 64961081 ~ 65019235 (-)
LOC103032200 LOC108415433 coding upstream 132089 65048058 ~ 65061608 (-)
trnad-guc_2 NA coding upstream 156175 65072144 ~ 65072215 (-)
trnad-guc_3 NA coding upstream 156773 65072742 ~ 65072813 (-)
G30857 NA non-coding downstream 5891 64885135 ~ 64886493 (-)
G30855 NA non-coding downstream 15714 64875838 ~ 64876670 (-)
G30804 NA non-coding downstream 59986 64720895 ~ 64832398 (-)
G30830 NA non-coding downstream 68260 64811386 ~ 64824124 (-)
G30806 NA non-coding downstream 69441 64730063 ~ 64822943 (-)
G30869 NA non-coding upstream 106383 65022352 ~ 65022952 (-)
G30900 NA non-coding upstream 238149 65154118 ~ 65159284 (-)
G30919 NA non-coding upstream 365450 65281419 ~ 65454260 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding upstream 557168 65473137 ~ 65474665 (-)
G30980 NA non-coding upstream 675854 65591823 ~ 65592054 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 93208 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1128711 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 1407363 63433792 ~ 63485021 (-)
G30376 NA other downstream 1557538 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 1604276 63136951 ~ 63288108 (-)
trnad-guc_7 NA other upstream 177109 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 181633 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 1946496 66862465 ~ 67044318 (-)
G31424 NA other upstream 2507903 67423872 ~ 67432424 (-)
G31437 NA other upstream 2587780 67503749 ~ 67528337 (-)

Expression


Co-expression Network