LOC103022286 (snx14,LOC108427503,LOC108279824)


Basic Information

Item Value
gene id LOC103022286
gene name snx14,LOC108427503,LOC108279824
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 66349351 ~ 66388214 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664956.1
CTCCGGgactcttattttaaaatgtagtcTCTCTAATCTGATAGGGAAATAAATAGTGAACTGTTGACATGTCGGAGAGACTGACATTACCAGTGTAAATATGAAGTAGTTTTAGAGAGGCGAGATTCTCCAGCCTTCGCTGAGTTAGGTCTAAATCACGGTTCCGGCCGAGGATCTCTTTAAGATGGCAGATGTTAAAAGATTATTGGCGACCCTCAGAAGAGGGTTTAGGATTGACGTGCTTATGGAAGTTGCCAGGCAGTATCCTTTTATATGCTTTTTGCTGATGTCCATGCTGTCATCAACCATAATCCTCACCAGGTATCTACATattctgatgattttttggTCTTTCTTTGCTGGAGCAGTTACCTTCTACTGTTCACTAAGTCCAAACTACCTCGTACCAAATGTCTTCTTTTCTATAAAGCCCAAAGATAAACGACAGGAACAGCAGGAGCTCTTCCCGCAGGGCCACAGTTGTGCGGTTTGTGGAAAAAACAAGTGCACTCGACACAGACCAACACTTCTTTTGGAAAACTACCAGCCGTGGTTGGGTTTGAAAGTTCACTCGAAGGTGGATTCATCCGTTGGAGAGGTGTTTGAGTTAATTCTGGAGAACTTTGTATATCCTTGGTACAGggATATTACTGATGATGAGGCTTGTGTGGACGAACTGAGGCAGACATTCCGTTTCTTTGCTTCAGTTTTGGTTCGACGAGCCCAGAAAgTGGACGTACCATCAGTAGCCACAGGTAAAATGATGAAGGCAGCTATGAAGCACATAGAGATTTTTGCCAAAGCACAGCAGAAAGttAAGAACTCTGAGAACCTGCAGCAGGCTGCTCTGGAGGAGTATGGTGCAGATCTGCACGTTGCTTTGCGCAGCCGTAAAGatgagctgctgtatctgagGAAACTCACAGAAATGCTCTTCCCTTACGTCGTGCCTCCTAAAGCCACAGACTGCAGGTCGCTGGCCCTGCTGATTCGAGAGGTCATGACTGGCTCAGTGTTTCTTCCAACCATGGACTTCATGGCAGAACCTGACACAGTAAACCACATGGTGCTTATATTCATTGATGACACTcctCCTGAGGCAGCAACTGAGCCTCCGTCTGCACCGGTGCCCTTCCTGCAGAAATATGCTGATTCGCGGAACAAGAATCCCTCTGTGTTAAAGCTGGACCTGAAGGAGATCCGCGATCAACAGGACCTTTTGTTCCGCTTTATGAGTTTCCTGAAACAGGAGGGTGCTGTGCATGTGCTGCAGTTCTGCCTCACTGTGGagGAGTTCAATGATAGAATCCTGTGTCCTGAGCTGAGTGACGTTGAGATGGAACAGTTGCATGGTGAGGTACAGAAGATCTATGAGACATATTGTCTGGATGAGAGCATTGACAAGATCAGCTTTGACCCCTTCATCATTGAGGAGATCCGTAACAttGCAGAGGGTCCATACACAGGCGTGGTGAAGCTGCAGAAGATGCGATGTCTCTTTGAGGCCTATGAGCATGTCCTGTCCCTGCTGGAGAATGTCTTCACCCCTATGTTCTGCCACAGCGATGAGtatttcAGATACCTGCTGTGCGGGGTGGAATCTCCTGCCAGGAATGCTAAACTTAATcgGAATTTGAGTTTGGATGACTTAAGGAACACATCTAAGCGAGGAGAGACGTTTGGGATCAGCCGTATTGGAAGCAAACTAAAGGGAGTATTCAGAAGTACCACTATGGAAGGAGCGATGCCGCCCAGCTACGCCATGGTTGAGGATGGAGAGGATGTGGTGGAGGAAGCAACTATGGTAGTAGAGGATGAATCTCCTGTCCCAGTTGAGATAACAAGCACTCCAGGAACACAGAGGAACCTTTCAGCATGGACCATTTCCATTCCCTTTGTGGATTTTTATGAAGATGAGGCTAAGAGAGAGCGTATTCCTGTTTTCTGGATTGACGTGGAGCGCCACGACCGCCAGCAAGTGGGCCATGAGGAAGAAAGCTGGTCGGTGTGCAGAAGATACCTGGAGTTTTATGTCCTTGAGTCCAAACTCACAGAATTCCATGGGTCATTCCCAGATGCTCAGCTCCCTTCTAAAAGGATTATCGGGCCAAAGAATTATGAATTTCTATCCTCCAAGCGTGGAGAGTTTGAGGAGTACCTACAGAACTTGCTGCGACATCCTGAACTAAGTAATAGTCAACTGCTGGCTGACTTCCTCTCTCCACACAGCATGGAGACACAGTTTCTAGACAAGATGCTGCCTGATGTTAATCTGGGAAGGATTTTCAAGTCTGTACCTGGAAAACTTATGAAGGAGAAAGGGCAGAACCTGGAGCCGTTCCTCCAGTCCTTCTTCAGCTCATGCGAGTctcctaaacctaaacccagCCGTAACGAGCTCACAGTCCTCAGTCCCTCATCCAGAAACAAGAAGCTGTTCAGTGATCTTTACAAAAATAACGCTGACCAGTTGGAAATCGCTGACAAGAAACACAACCAGAACTACTTCTTGGAGGTGTTGGATCTGGAGGGGGTGTATGACTACATGATGTATGTGGGTCGTGTGGTGTTCCGAATGCCTGATTGGCTGCACCATATGTTGAGTGGAGGCAGAATTCTGTTTAAGAGAACGCTGGAGGCATACATGCAACAATACCTTCAGTCCAAACTAGACAACATCCTACAAGAGCACCGCCTCGTCTCTCTCATCACTCTGCTCAGAGATGCCGTGTTTTGTGAGAACAATGAAGAACGTTCCCCCGAGGACAAACAGAGAAGAGCCAAACAGACCTTTGAAGAGATGATGAACTACCTGCCAGGTTAG

Function

symbol description
snx14 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Involved in autophagosome maturation. Acts upstream of or within autophagy and cerebellar Purkinje cell layer development. Predicted to be located in late endosome and lysosome. Is expressed in central nervous system. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Orthologous to human SNX14 (sorting nexin 14).

NR:

description
PREDICTED: sorting nexin-14-like isoform X1

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17926 SNX14; sorting nexin-14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664956.1 True 2824 mRNA 0.47 27 66349351 66388214

Neighbor

gene id symbol gene type direction distance location
cnr1 cnr1,LOC104936193 coding upstream 7394 66336429 ~ 66341957 (+)
LOC103021656 rngtt,LOC107554925,LOC107731501,LOC107660510 coding upstream 75634 66096715 ~ 66273717 (+)
LOC103035811 dnm3,dnm3a,LOC107712872,LOC107581471 coding upstream 281315 66007256 ~ 66068036 (+)
mettl13 mettl13,LOC107712871,LOC107733805 coding upstream 342890 65989532 ~ 66006461 (+)
prrc2c prrc2c,LOC107597798,LOC107581475 coding upstream 418120 65908308 ~ 65931231 (+)
htr1b LOC108427470 coding downstream 292908 66681122 ~ 66684322 (+)
LOC103023947 impg1,LOC107660503 coding downstream 413377 66801591 ~ 66859895 (+)
LOC111191093 LOC103025937 coding downstream 707684 67095898 ~ 67096914 (+)
LOC111194387 NA coding downstream 709749 67097963 ~ 67100303 (+)
LOC103025937 LOC103025937 coding downstream 724982 67113196 ~ 67116181 (+)
G31123 NA non-coding upstream 73752 66275166 ~ 66275599 (+)
G31119 NA non-coding upstream 269093 66079904 ~ 66080258 (+)
G31091 NA non-coding upstream 283254 66065353 ~ 66066097 (+)
G31090 NA non-coding upstream 331100 66012182 ~ 66018251 (+)
G31012 NA non-coding upstream 477664 65871198 ~ 65871687 (+)
G31161 NA non-coding downstream 57947 66446161 ~ 66446404 (+)
G31181 NA non-coding downstream 65288 66453502 ~ 66454191 (+)
G31192 NA non-coding downstream 193588 66581802 ~ 66582566 (+)
G31234 NA non-coding downstream 432975 66821189 ~ 66959582 (+)
G31244 NA non-coding downstream 504215 66892429 ~ 66917769 (+)
G31000 NA other upstream 511986 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 1249989 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 1250778 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 1262571 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 1302373 65022419 ~ 65046978 (+)
G31355 NA other downstream 826091 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 1095121 67483335 ~ 67506898 (+)
G31407 NA other downstream 1108989 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 1303227 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 1631826 68020040 ~ 68022940 (+)

Expression


Co-expression Network