LOC103045824 (LOC108256302,LOC108439581)


Basic Information

Item Value
gene id LOC103045824
gene name LOC108256302,LOC108439581
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67878540 ~ 67929915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665254.1
agtgagtgagactgGGCCGGAGAGGCAGGCTGCAGTCCGCCGCTGGCTCCGGTTTTACAGGTGAACAGTATTAGAGTACAGGGGCGGAGGAGGGGAGCAGCGCGGCGGTGTTATCAGTGTGTTAACAGCACGCAGGCGCTGTCGGTCGGCTCCCCCGGCGCGGACTGGGAGCTTAGTCACTCCGCGGGAGAAGAGACTAACCGAGGAGCTCCTGGAGCCGCTCGCCCGGGCAGTGCTGGAAGTGGGCAGGTCCTCCGGCGGGGTGTTACTGGGACTGGACGGCTCCCCAGTGTGGCTGTGGTTTACAGATACATGTCTGATCTGCGGACTGTAACCCGCTGCCCGCTCTTCCAGCATGTCTCCCGGAGCCGAGAGCAGGCTGGAGTCCCGCCTGAGGAAACTGGAGGCGCTGATCAGAGAACAGCGCTCAGCCCTAAACCTGGAGAGCCTGCTGGATTCCGTGAACGCCTTGGCCCTTGACCTGAATCACCCTGCACTTCGGAAGAACAAGAACATTGATGCCTTCTTAAGCAGATATGAAAAGGCCGTTAGCCGTCTGAGGGAGCTGCAAGCAAGGTTGGATGATTTTGACCGAATAAagctgattggcagaggagcaTATGGGGCAGTGCAGCTGgtgCGTCACAAGGTCTCTAAGCAAGTCTATGCTATGAAGCAGCTGAGTAAGTTTGAGATGATCAAGCGCTCAGATTCTGCTTTCTTTTGGGAGGAGCGTGACATCATGGCCTTCTCCAACAGCCCCTGGATTGTACAGCTATGCTGTGCTTTCCAAGATGAGCGGCACCTGTACCTGGTGATGGAGTTCATGCCAGGAGGAGACCTAGTTACTCTGACAATGAACTACGACATGCCAGAAAAGTGGGCTCGATTCTACACGGCAGAGGTGGTGATGGCGCTGGATGCCATCCACTCCCTGGGCTTCATTCACAGAGACATCAAACCCGACAACATGCTTCTCGACCGCACCGGCCATCTTAAACTTGCAGACTTTGGCACCTGCATGAAGATGGACaagACTGGCATGGTCCGATGTGACACAGCTGTAGGGACTCCTGACTACATTTCACCAGAGGTGCTGATGTCACAGGGTGGGACGGGTTACTATGGACGTGAATGTGATTGGTGGTCTGTGGGAGTCTTCCTCTATGAACTACTGGTTGGTGACACTCCATTCTATGCAGAGTCACTGGTGGGCACTTATGGAAAGATCATGGACCACAAAAACAGTCTGACATTTCCTGATGATGTGGAAATGTCAAAAGAAGCAAAAAGCCTGATCTGTGCCTTTCTGACTGACAGGGAGGTGAGGCTGGGCCGGACAGGAGTGGAGGAAATCAAATGTCATCCCTTTTTCAAAAACGACCAGTGGACCTTCGACACCATACGAGACAccATGGCTCCAGTGGTGCCAGAGCTAAACAGCGATATTGACACCAGTCATTTTGATGACATTGAGGATGAGAAAGGAGATGTGGAGACGTTCCCTCCAGCCCGCGCCTTCGTAGGCAATCAACTACCATTTGTGGGCTTTACCTACTTCAGAGAGAACCAGTTGTTAAGCAACAGCGTAAGCTCTGCAGATGATGAATCAGACATCTATGTTGACGGTCCCTCAGAAAAGGAATGTTACTCAGCCAAATCTGagTCTGATGATCTGCAGAAGAAGCTGAGTAAGTTGGAGGAGAAGTTCAAAAATGAAATTCAAGTCAAGGGGGAGCTGGAAAGCAAATGCAGAACTGCAAACGATCGGCTAGATAAACTGTCAAAAGAGCTCGAAGAGGAGATGAGTTCGAGGCAGAGGGCGGAGGAATTTTTAAGAaagttggagagagagagcgctctcTTGCAGCACCAGAACACAGAGAGCCTGAGAAAAGCAGAGCTGGAGACGGAGAGAAAGCGTGGCTTAGAGAATGAAGTGAGCGGTTTGAAAGAGCAGCTGGCTGAGTTGAAGAAGAAGAGCCAGATCTCTCAGATCTCCACTGAGAAAAACATCCACCTGGAGAGACAGttGGAGGAGGTCAGTGCTAAGCTGCAGGCAGAGGTGCAGGAGTCTGGACGCCTGAAGAAAGCTCAGGGTGAGGCAGTAAAGCAGGCCCAGCAGCTGGAGCTCACTCTCAGGGAACTGCAGGAGCGGCTGACCCAGCTGGAGAGCAGCAaactggtgctggagcaggacAAACTTGGCCTACAGGACGCTCTGGAGGCTGAGAAGAAGGAGCACAGCCTTGGCACCGAAACCATTACTGACCTGCAAGCTCGTGCCTCAGGTCTGGAGGAGGAGCTGAAGCAGATGAAAGCTTCTCTCTCTAAGGCTGAGGGGGAGAAGAGACAGCTACAGGAGGAACTGACCGGCCTAGAGAAGcTGAGGAGTCAGCAGGAGATTGATCTCTCCTTTAAGCTCAAATCTGTCCAGCAGCGTTTGGAGCAAGAGGAAGAAGAACATAAGGCCACTAAAGCACGACTTGCTGACCACAGCAAACTCAACCAGTCCATTGAGGAGGCCAAGTCGGAAGTCCTGAGAGATATGGAACGCAAGTTACAGGAAGAGCGCCAATCTAAGCAGCAGCTGGAGGGTAAACTAATGCAGCTGGAGAAGCATCAGTCTGTCCTTGACTGTGATTATAAACAGGCACAGAATGAGCTGCAGGAATTAcgttcacacaaacacaaactcacTGAGGAGgTGGATGTGCTGACTGTGCGTGTGGAGCAGGAGGCTCAGCGGCGCAATCTCTCTCAGGCTGATCTGAAGGCTCAGAGGCAAGAGGTCACCACACTTCGCTCCACAGAAAAACAACTCAAACAAGAACTGAACCATCTACTGGAGCTCAAACTCAGTCTGGAGAAAAATAACCAAGAATTGCGCAGGGAGAGAGAAGAGGCTGACTTGCACCTGAAGGAGTTGAAGGACCAACTGGAAGCTGAGCAGTATTTCACTAAACTGTATAAGACCCAGCTTCGTGAGCTGAAAGAGGAGTgtgatgagaaaacaaaactgtaccaGGATGCCCAGCAGAGACTTGAGGATCTACAGGAAGAGAGgGATTCCCTGGCTGCTCAGTTGGAGGTGAGCCTGACGAAGGCAGATTCAGAGCAGCTGGCACGCTCCATCGCTGAGGAGCAGTACTCAGACCTGGAGAAGGAGAAAATCATGAAGGAGTTGGAGATCAAAGACATGATTGCCAGGCACCGGCAGGAGCTCAGCGACAAGGACAATACTATCAACTCGCTAGAGGAGTCCAACCGCACGCTGACAGTCGATGTGGGCAACTTGGCCAGTGAGAAAGAAGAGCTCAATAACCAGCTTAAAGAACTTCTGCAGCAGTTGCAGAGGGCtaaagaagaggagaaagagatgAGCATCGTGAAAGTTTCCTTTGAAAAGCAGCTTCAGTCTGAGAGAACGCTCAAGATCCAGGCGATAAATAAGCTGGCTGAGATCATGAACAGGAAGGATGTGGTGCCCAGCGGTCGCCGTGGCGACGACATAGAGCTGCGCAGGAGGGAGAAGGAAAACAGGAAGTTGCAGCTGGAGCTGCGCACCGAGAGGGAGAAGCTCAACAGCACCATCATCAAGTATCAGAAGGAGATTAGTGAGATGCAGGCTGTGATAATGGACGAGTCGCAGGTGCGTGTGGATCTGCAAATGGCTCTGGACAGTAAGGACAGTGATATTGAGCGCCTGCGCAGTCAGCTGACCTCTCTCAGTATCCATTCCTTTGATACCACCAGCATCAGCAGTATAGGCAATGAGCGAGACGACGAGTCTTACCCAGAGTCGAGTCTGGAGGGCTGGCTGTCCCTTCCAAGTAAGAATACCAAGAGATTTGGATGGGATAAGAAGtaTGTGGTGATGAGCAGTAAGAAGATCCTGTTCTATGATTCTGAGGAAGATAGAGAACAGTCCAACCCATTTATGATACTGGATATAGATAAACTCTTCCATGTTCGGCCTGTCACTCAAACAGATGTTTACCGTGCAGATGCCAGAGAGATCCCACGCATTTTCCAGatACTCTATGATAATGAGGGGGAGAGTAAGAAGGATCAGGAGGGCACTATGGAACTCTTGTCGGTGGACAGGTCAGCGTGCATCCCCCACAAAGGTCACGAGTTTGTGCCTACACTCTATCATTTCCCCTCTAGTTGTGAGGTGTGCCCACGGCCCCTATGGAACGTCTTCAAGCCTCCTCCAGCTCTGGAGTGCCGCCGCTGCCGCCTCAAATGCCACAAAGACCACTTGGACCGAAAGGAGGAGGTGCTTGCGCCCTGCAAAGTGAACTACGACATGTCCACGGCtaaagagctgctgctgctggcaaGCTCCACGGCAGAGCAGCAGAAATGGGTCAGTCGCCTACTAAAGCGAATTCCTCGCAAATCATCTGTACCAGCTTTGACCCACACACCCCCTCAGGAGCCCCCTGTCGCTACGTCACCACCACAGCCCTCACCACTCCTGTCGCCCCGCAACTCCCCAAAACTCTCCCCCAGAGGGGCTATCAGGGTGCAGAGCAGAGGTCCTCCACCTTCTGCTAAGACCAGCATTATAGAGTTTGGACTGAAGGACTGGGGTTGGGCTGTtcatgaggatgatgatgatgatgacgatatGTTTGACTTCTGAAGATGTGAAGAGACTGCAGGGTAACCAGAGTGGCACATTATCAGTATGATGACATCTAAAGCAGCTTAAAGCTTGTTGTGTGAGAGGGCTCTTCATTATAataatgattatgatgatgatctTCTTTTTTACTAACTTTGGTGTGATGaaattatttgtttgtattaaattagattagaagATGTTGCactcacatttaaaatgtagtatATATTAGAAATTTGTTTCAATTGCATcacatatataaacaaaactgttctcCTAGAGACTTGAGTAAAGTTGA

Function

NR:

description
PREDICTED: rho-associated protein kinase 2-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04514 ROCK1; Rho-associated protein kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665254.1 True 4934 mRNA 0.51 35 67878540 67929915

Neighbor

gene id symbol gene type direction distance location
swt1 NA coding upstream 299459 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 350184 67515932 ~ 67528356 (+)
LOC111194389 NA coding upstream 682113 67195516 ~ 67196427 (+)
LOC111194388 NA coding upstream 684488 67193228 ~ 67194052 (+)
LOC103025937 LOC103025937 coding upstream 762359 67113196 ~ 67116181 (+)
LOC103035042 LOC108439590 coding downstream 74319 68004234 ~ 68018991 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 94022 68023937 ~ 68042368 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding downstream 422512 68352427 ~ 68724643 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 1273919 69203834 ~ 69215863 (+)
afg1l NA coding downstream 1313803 69243718 ~ 69279965 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 16267 67860633 ~ 67862273 (+)
G31479 NA non-coding upstream 223935 67654149 ~ 67654605 (+)
G31406 NA non-coding upstream 298633 67489637 ~ 67579907 (+)
G31410 NA non-coding upstream 361506 67482593 ~ 67517034 (+)
G31370 NA non-coding upstream 523853 67350795 ~ 67354687 (+)
G31583 NA non-coding downstream 57518 67987433 ~ 67987677 (+)
G31595 NA non-coding downstream 145282 68075197 ~ 68075581 (+)
G31596 NA non-coding downstream 166900 68096815 ~ 68097060 (+)
G31629 NA non-coding downstream 351425 68281340 ~ 68281596 (+)
G31648 NA non-coding downstream 695374 68625289 ~ 68660107 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 33906 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 371642 67483335 ~ 67506898 (+)
G31407 NA other upstream 380843 67497203 ~ 67497697 (+)
G31355 NA other upstream 663354 67214305 ~ 67215186 (+)
G31000 NA other upstream 2041175 65828781 ~ 65837365 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 90125 68020040 ~ 68022940 (+)
G31702 fam84a other downstream 896728 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1077526 69007441 ~ 69161883 (+)
G31939 NA other downstream 2267010 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 2373121 70303036 ~ 70329028 (+)

Expression


Co-expression Network