ddx1 (ddx1,LOC107726609)


Basic Information

Item Value
gene id ddx1
gene name ddx1,LOC107726609
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68339825 ~ 68351833 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665319.1
TAACTGAATCAAATGCCCACAACACACTCCTCAGCTCGCACCGGCTTTCGCTGTGAAAGCCGGGTTACAGTAATCAGTGTAGTTTAGTATAAGTGTTAAAGGTGTGTGATTTTATCTGGATTAAGGTGTGAAGAGGATCGATATTCCAGAGCAGtgtgaggaggagaaggaggagctgATCTCTCTCAGTAGAGGAGTTCAGTCTGAGTTATTTAGCGCTCTGTCACGGGTGAACATGGCTGCGTTTGGAGAGATGGGCGTGATGCCTGAGATCGCTCAGGCTGTTGAGGAGATGGACTGGCTGTTGCCAACAGACATTCAAGCTGAGTCTATTCCACTGATTCTTGGTGGAGGAGATGTTCTTATGGCTGCTGAGACTGGGAGCGGAAAAACTGGGGCGTTCAGCATCCCAGTGATCCAGATCGTGTATGAAACATTAAAGGATCAGCAGGAGGGGAAGAAGGGTCGTGCTGCAGTGAAGACAGGAGGAGCAGTGTTTAATAAGTGGCAGATGAACCCATATGACAGAAGCCCAGCATTTGctaTTGGCCCAGATGGACTTTGCTGCCAAAGCAGAGAGTTTAAGGAGTGGCATGGCTGTCGTTCCACCAAAGCTGTGACTAAGGgcaAATATTACTATGAAGTCTCCTGTCACGACCAAGGGTTGTGCAGAATTGGTTGGTCCACTAGCCAGGCTGCATTAGACTTGGGTACGGACAAGTATGGCTTTGGCTTTGGAGGTACCGGGAAAAAATCCCACAATAAGCAGTTTGACAGTTACGGAGAGGAGTTTACTATGCATGACACCATCGGATGCTACATAGACATGGACAAGGGCCATGTGTCATTTTCTAAAAATGGAAATGATCTTGGCTTGGCCTTTGAGATTCCACAAAACCTGAGAAGCCAGCCATTCTTTGCCTCCTGTGTGCTCAAGAATGCTGAACTAAAGTTTAATTTTGGAGGAGAGCCATTTAAAAACGCCCCCAAAGAGGGCTTTAAGGCCTTGGACCAAGCGCCAGACGGACATGTGGTCAAATCAAGCCAAACTGGCAGTGCCACAGTGAGCCAGGTAAAATCCAGCTCCAACTCTCCCAGAGCTCTTATTATCGAACCATCGAAAGAGCTGGCCGAGCAGACCCTCAACAATGTCAACCAGTTTAAGAAATACGTGGAAAACCCCAAACTACGAGATCTGCTGATCATTGGAGGAGTAGCAGCCAAAGAGCAGCTCTCTACTTTGGAAAGTGGGGTTGATATAGTTGTTGGCACACCAGGCAGACTGGATGACCTCATATCTACAGGGAAGCTGGATCTGTCCCAAGTCCGCTTCCTGGTTCTGGATGAGTGTGACGGGCTTCTCTCAGCTGGGTACACTGACTTCATCATGAGGGTCTTCAACAAGATCCCTCAGGTCACCTCAGATGGAAAGAGGCTACAGGTCATTGTATGTTCGGCTACACTGCACTCATTTGATGTGAAGAAGCTCTCAGAGAAGATCATGCACTTCCCTACCTGGGTTGACCTGAAGGGGGAGGATTCTGTCCCAGAGACTGTCCATCATGTGGTGGTGCCTATCAACCCCAAAAATGATCGGCTTTGGGAGAGACTTGGCAAGAACCATATAAGGACTGATGAGGTTCATgccaaagacaacacaaggCCTGGAGCTAACTCTGCAGAGATGTGGTCAGAGGCCATAAAGATCCTGAAGGGAGAGTACGCAGTGCGGGCCATCAAAGAGCACAAGATGGACCAGGCCATCGTCTTCTGCAGAACCAAGATCGACTGCGACAACATGGAGCAGTACTTCATCCAGCAAGGAGGAGGTCCAGATAAAAAGGGACATCAGTTCTCATGCGTCTGTCTCCATGGTGACAGGAAGCCCAACGAGCGTAAAAACAACTTGGAGAGGTTCAAGAAACGTGAGGTGAGGTTGCTGATTTGCACAGATGTGGCTGCCAGAGGAATCGACATCCATGGTGTTCCATATGTGATTAATGTGACTCTGCCAGATGAGAAACAGAATTATGTGCATCGCATTGGAAGAGTTGGCAGAGCTGAGAGAATGGGTCTGGCCATTTCCCTGGTGGCCATGGAAAAGGAAAAAgtgtggtaCCATGTCTGTGCTAACAGAGGGCGAGGCTGTTCTAACACCAAACTGAAGGAAGATGGAGGCTGCACTATATGGTACAATGAAAAAGAGcTGTTGGGAGATATTGAGGAACACTTGAAGTGCACCATTACGCAGTGTGAGCCGGACATCAAAGTGCCTTTGGATGAATTTGATGGCAAGGTCACCTACGGCCAGCgcagagctgcaggagGTGGTCTCTATAAGGGGCATGTTGATGTACTGGCTCCCACTGTACAAGAACTGGCTAATCTTGAGCGGGAGGCACAAACCTCTTTCCTGCACCTGGGATACCTCCCCAACCAGCTCTTCAAAGCTTTCTAAGCAGCACTTCTCCACACCATAGACCATTAGTGTTTAAAAGGAAGTTCAAACACTAAATTAAGAGCTGTTTCATTCATGTTGTTAAATTGttagattaatataaatattaatctatggtttttcttcatttcattatttcattagtAATATTCAATAAGTAATAATTTTTTTGAAGGCCttaaaaaggtattttttgtttgtttttgttggttGATCTTGCACTCCTGTAAGACCTCTGAAGTGTCAATTCTGCAAAATAAACTGTTAACTGCATTA

Function

symbol description
ddx1 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and exonuclease activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DDX1 (DEAD-box helicase 1).

NR:

description
ATP-dependent RNA helicase DDX1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13177 DDX1; ATP-dependent RNA helicase DDX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665319.1 True 2734 mRNA 0.47 27 68339825 68351833

Neighbor

gene id symbol gene type direction distance location
mycn LOC108439586 coding downstream 109996 68223824 ~ 68229829 (-)
LOC103046744 NA coding downstream 357897 67973225 ~ 67981928 (-)
LOC103046427 LOC108439583 coding downstream 367467 67968136 ~ 67972358 (-)
LOC103045211 NA coding downstream 486052 67852557 ~ 67853773 (-)
trnat-agu_1 NA coding downstream 681174 67658579 ~ 67658651 (-)
scml4 scml4,LOC107726459,LOC107679489,LOC107726622,LOC107601197 coding upstream 744421 69096254 ~ 69140809 (-)
LOC111191181 NA coding upstream 815967 69167800 ~ 69172924 (-)
ostm1 ostm1 coding upstream 828392 69180225 ~ 69187900 (-)
snx3 snx3 coding upstream 871458 69223291 ~ 69243632 (-)
sesn1 sesn1,LOC107601436,LOC107696127 coding upstream 1009248 69361081 ~ 69438550 (-)
G31630 NA non-coding downstream 42757 68296864 ~ 68297068 (-)
G31616 NA non-coding downstream 308835 68029478 ~ 68030990 (-)
G31598 erh,ERH,LOC107580641,LOC105904210,LOC106607637,LOC100699790 non-coding downstream 316938 68020087 ~ 68022887 (-)
G31573 NA non-coding downstream 396672 67942909 ~ 67943153 (-)
G31572 NA non-coding downstream 397118 67942497 ~ 67942707 (-)
G31686 NA non-coding upstream 434567 68786400 ~ 68787002 (-)
G31782 NA non-coding upstream 706921 69058754 ~ 69059080 (-)
G31803 NA non-coding upstream 927835 69279668 ~ 69281508 (-)
G31817 NA non-coding upstream 995200 69347033 ~ 69347700 (-)
G31847 NA non-coding upstream 1089587 69441420 ~ 69450727 (-)
G31622 NA other downstream 248244 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 399112 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 454392 67855606 ~ 67885433 (-)
G31437 NA other downstream 811488 67503749 ~ 67528337 (-)
G31424 NA other downstream 907401 67423872 ~ 67432424 (-)
fam84a fam84a other upstream 474156 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 793475 69145308 ~ 69161904 (-)
LOC103033556 LOC108410406 other upstream 2566148 70917981 ~ 71043182 (-)
G32343 NA other upstream 2737042 71088875 ~ 71089461 (-)
G32364 NA other upstream 2786653 71138486 ~ 71142338 (-)

Expression


Co-expression Network