nr2e1 (nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776)


Basic Information

Item Value
gene id nr2e1
gene name nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 69203834 ~ 69215863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665374.1
AAAGGGAAGTTgggcctctcctcctcctcctcctctaccTCCTGCTTCCTCCTCAAATACTTCTCATGCATATTCCCGAAGGCTTTAATCTGACGGCGCACATCACAAAGTCAGCGCGGCTCCGGGGCTGCCCGCATTTCTGCGCTCTGAGCTTTCTCCCCTCTCCTGCTGTTATTTATTCCACCTCTCACACTGACCGGCTGGGTCTATctaagtgtgttttttcaccgCTGAGTTCTGGGCCCCGTTTACCGAGAACAAACTCTACTGCAGCAACTTTGGCTGCCCAAGGGTCATCCCGTGTGTAGGTCACCTCCCAGCCCGTGCATGCGCGTGGACTGCGGGTCTGACCGGTCCACATCATACAGCTTCAGGGCAGCTCACGCCGGGGAGACACACTGGACACTCACACCGCCTCCGCAGCGCTCAGCATCTCCACCGGCACCTACCCGGACTGCTGCGACAAGatctaaaactgattaaaacccgCTGCTGACTTTCCCTCAGCCGAACTGGAAGAGGAGCCCAAGATGAGTAAAGGTTCCAGCTCAACAAGTGGCtgtttggatattttaaacgTCAAGTCAAgCCGTATTCTGGACATCCCGTGTAAAGTGTGTGGAGACCGCAGTTCAGGTAAACACTATGGGGTGTACGCGTGCGACGGCTGCTCTGGCTTCTTCAAGAGGAGCATAAGGAGGAACCGGACATACGTCTGCAAGTCCGGCACGCAGggtggATGTCCTGTTGATAAAACTCACAGGAATCAGTGTCGTGCATGTCGCTTGAAGAAATGTTTGGAAGTAAACATGAATAAGGACGCTGTTCAGCACGAGCGGGGTCCGAGAACGTCCACCATCAGGAAGCAGGTGGCGCTCTACTTCAGGGGCCACAAGGACGTAAACGGTTCTTCTGCCCCATTTCCCACCGCCTCCATCCCTGGACCACCCTTCTTCACCACCGTCAGCCAGCTGGACACACACAGTCTCGATCTTAATACAGTGGCTAGCACGCCAGAGCGCCAGCAGGCTGTGGTGGGGCTCGCTCAGCCCACTCCCAAAtACCCCCATGAAGTGAGTGGTGCACCTCTGTATTTATATGAAGTGGCCACTGAGTCAGTGTGTGAATCAGCGGCACGTCTCCTCTTCATGAGCATCAAATGGGCAAAAAGTGTCCCTGCCTTTTCAACTCTGCCCTTACCTGACCAGCTGATCCTATTAGAGGAAGCCTGGAGGGAACTGTTTGTACTGGGCATAGCGCAATGGGCCATTCCTGTGGACTCCAACACTCTGCTGGCTGTTTCAGGGAtgacagcagaaaacacagaatCTCAGAGGCTCAACAAGCTAATGGAAGAGATCCAAGCGCTGCAGGAAGTGGTGACGCACTTCAGGCAGCTCCGGCTAGATGCCACAGAGTTTGCCTGCCTCAAGTGTATAGTCACATTTAAAGCAGTTCCAACACACAGTGGCTCAGAGCTGAGGAGCTTCCGTAACGCCAGCGCCATCGCAGCCCTGCAAGATGAAGCTCAGCTCACCCTGAACAGTTACATCCACACAAGGTACCCCACTCAGCCGTGCCGCTTCggaaagctgctgctgctgctgcccgcGCTGCGCTCCGTCGGTCCGTCTACCATCGAAGAGGTGTTTTTCAAAAAGACCATCGGGAACGTCCCTATCACACGACTGCTCTCCGACATGTACAAATCCAGTGACATATGAAACCCGGCCACTAAAACATAAGGCACGATTCGCGCATCCCCAACCAGGACTAActggaaaaacactggaaaactgGAATGTGAGAGGCGAGTGATGCAAATCAAACAAACAGCATTAAAAGACTCACGATACGATACGATTATCATCATGTAACACGAGGCTGACTTTCCACCACGGCGGGGATGCAGAACACCTGGAGGCGTCCTACTCTTAAAAGAGATCCAGAGATTTCACGAAGCGCTTAAAGGGTCTGTGGAAAGTCCAGCCTCAGGCCAGCCTGGGGACGGGATGTTTCCTGGGTTGAGGAGCAGTAGAGCAGAAAGAGGGAAGACTTTAAAGTCAAGACCTAAACTATGTTTCTAACTGTACATCTAATCTACGGTTTTTAAGTATACTTACTGAGTTAACCTGATTCAGACAGTCGAGGGGAAAGCGGTAAACCACTGTAAGCCGCTCGGTTGGGTAGTTGCGTACAATCATGAACGGTTGGTTGCTCAATGGAAAGACGGTTTAAGTAATGAACTCCAAAAAGACCAATGAGCTTTTCCGACCAATGTTCTTTTTTATCAAattgcaaacttttttttatttcttctgcaACGTTCTGTCTGTAAGAGTTTGGCGGAaaccaaatatatatttgatatattttagaaagatagagagaaagagaaaggagaaggagggacagagagatggatagagGGAGAGTGGTGGAAGAGGGATAAAGCCGCGAGTTGTCGCTGTCCATTCGACGAGGTGCTGAAAACCAAAGGAGCAACGTAAAGCGTGAAACTCTGACCTTGTCCCGCCTCGCGCAAACTACTCAACAACGCCAAGGACGACTTTCAACTACAAGACAAAACTagaggtgggtaacccaggtccataaagtaaaaatacaacccagggttttgtaccaactACCTGGACGGCTCTGCTGCAGATCAGACAAAACCCACCTCTagacaaaacagacaaataacacaactacaaacaaacacaaacaaatctaAACAGCCTATTTCGTGGTCCAACGCAGCTTTCGGAGCTTACGACGAGTAGTTACTATACTAACATATGTtgacacacacatgctcagcaCTTGTAAGGGTGGATTTTGTAGTCTGTAAATATATTCATTGTTGTAAAAAGTACAAACATTTGGTGAAAGTTGTctaaatattagaataaatattgaatattga

Function

symbol description
nr2e1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665374.1 True 2932 mRNA 0.50 9 69203834 69215863

Neighbor

gene id symbol gene type direction distance location
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding upstream 479191 68352427 ~ 68724643 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 1161466 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 1184843 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 1273919 67878540 ~ 67929915 (+)
swt1 NA coding upstream 1624753 67533815 ~ 67579081 (+)
afg1l NA coding downstream 27855 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 70152 69286015 ~ 69321707 (+)
armc2 NA coding downstream 122678 69338541 ~ 69359553 (+)
cep57l1 NA coding downstream 225580 69441443 ~ 69450742 (+)
LOC103045488 grm1a,grm1,LOC108436473,LOC108279026,LOC107679500 coding downstream 259979 69475842 ~ 69522615 (+)
G31724 NA non-coding upstream 103272 69097291 ~ 69100562 (+)
G31720 NA non-coding upstream 163910 69038510 ~ 69039924 (+)
G31715 NA non-coding upstream 237024 68966479 ~ 68966810 (+)
G31648 NA non-coding upstream 543727 68625289 ~ 68660107 (+)
G31629 NA non-coding upstream 922238 68281340 ~ 68281596 (+)
G31758 NA non-coding downstream 239878 69455741 ~ 69546704 (+)
G31932 NA non-coding downstream 889715 70105578 ~ 70106122 (+)
G31938 NA non-coding downstream 969748 70185611 ~ 70187725 (+)
G31993 slc22a16,LOC107693213,LOC107601215,LOC107732637,LOC107696098 non-coding downstream 1000368 70216231 ~ 70217718 (+)
G32014 NA non-coding downstream 1161834 70377697 ~ 70379706 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 41951 69007441 ~ 69161883 (+)
G31702 fam84a other upstream 376262 68826643 ~ 68827572 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 1180894 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 1359200 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 1696936 67483335 ~ 67506898 (+)
G31939 NA other downstream 981062 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 1087173 70303036 ~ 70329028 (+)
G32105 naprt other downstream 1413069 70628932 ~ 70639739 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 1640948 70856811 ~ 70867643 (+)
G32198 NA other downstream 1857985 71073848 ~ 71075886 (+)

Expression


Co-expression Network