arhgap39 (arhgap39,LOC107672944,LOC107559071)


Basic Information

Item Value
gene id arhgap39
gene name arhgap39,LOC107672944,LOC107559071
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70648513 ~ 70702789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665643.1
GTTGTCGGTGGTGACGGCGACGCGGAGAGACAGCGCGTGCTCCAGATCCGTACTGCGGCGCCCGAGCCCCTACCACCATGACTGGCGCGCTGAGGATTACTCCGACTGGATTTTAAGaggcagagagaagagaggccATGGCGGAGAGGTTGGAGTGGGTGGAGATCCTCGAGCCCCGCACAAGGGAGCGGATGTACGCTAACCTGCTGacgggagagtgtgtgtgggacgCCCCGGCGGGTGTGCGGATAAAGCGCAGCGGTGAGGACCAGTGGTGGGAGCTGTTTGACTCCAACACCTCCCGCTTCTATTACTACAATGCCTCCACCCAGCGCACCGTGTGGCACCGACCACACGCCTGTGACATCATCCCCCTCGCCAAGCTCCAGACCCTCAAACAGAACACGGATTCACCCCCACCCGTCACCACCACGATCAGTGCCTCGGCCGACAGCAGCCCGGCCCGCAGTGCTGTCAGCACCACATCTTCACAAGAGCAGGAGGACAAAACAGCACCCagggaggagggagagagATTCAGGTGGGGAACTGGCAGCAAGGACAGAATGCTGATTAAAGTATCAGACAGGGAACCCAGTTTTCTGTCACAGGGAAATGGCTATTCTGGGTCCTCGCCTCGCTCCAGACGATCATCAAGCAATGCACCCTCTGACCCGGAACTCACCCCACACTCTCTACCTGACCGCCGCCAGTCACAGTCCCCCTTTTTAAAAAGGGCAGAGCTTGGAGGTACTCAGCGGCGCTGCTCCGGCGATTCACAGCCTCCTTCACCGCGTTATGCTTATGAACCTCCACTCTATGAGGAACCTCCTTCAGACTACCAGTCTCCGCCTATTTATGAAGAACCGCCCACTGACATGCATTGTGACCCCAGCTTCTATGGTTCTGACAGGTCACCAGCACGTAAACCCGGTCTTTACCACTCACCTAAACAAAGCCCCTCCCCTTATAGTCAGCTGGTGTTGACCAGGCAAAGAGGCTCCACCCCTGAGAAGACCTGTCAGGGGGACCGTGATTACAGTGGGCGTGACTATAGTTCTGCAGGGCGGGACTACAGTTCTGGTGGACGAGACTACAGCTCTGGTGGAAGAGACTACAGTTCTGGTGGGCGGGATTATAACTCTGGTGGACGGGAATACAGCGCAGCAGGACGGGAATATGTAAAACAGCTGGTTTATGTGGAACAATCAGGCTCCTCCCCAAGGTTCCGGACAACAGAGCGACTTTTAAGCTATGGCACAACTGGAACTGGATGTATGCCTGCTGGACTGTCTTATGGTGGCTCCTTTACACTACAGCACATGCATGATGGCGGTGGTGGCAATCGAAAACGCAAAAATCGTAAGCCATCCTTGCCCGGTGGCGAGGGTGAAGGCATGGGTGCTGGTGTTGGAGCGATGCTCACCCAAGCACGACTGGCCTGGGAGGCCCAGCAACTAATACAGCAGCGTGGGGGTGCGGCCTCAGGGGGCGGCGCTAAGGATGGTTATGAAAGCGATGGGGCTACGCCTCTACCACTGCCTGGGCCGGTGGTACGGGCATTCAGTGAAGATGAAGCCTTGGCCCAACAGGACAGCCACTGGAAGCGTGCTACACTGGACAGACTTGCATTTCCTCAGACACTACTAGAGAAAAGTTTGTCTGTACAAACCAACCTGGCATCACCTGAACCTTACCTGCACCCCTCACAGtctgaaGATCTTGGTGCGTGCTCACAGTTTGAGGCTAGTCGAAATGCCCGGAACATGATGCCCAGCGCCAGCTGTGGCGTGTTCCCAGAATTTTCTCTGCGAAAGCCCTCTTCCGAGACTGACATTGAAAACTGGGCATCCAAGCACTTCAACAAACACACCCAGGGTCTGTTCAGAAGGAAAGTGTCTATTGCAAACATGTTGGCCTGGAGCAGCGAACCAATTAAGAAACCCATGATTGTTACGACGGACCGCACAGTGAAGCGTGACGCCGTAGAGCTCTTCAAACTTATTCAGACCTACATGGGTGACCGCCGGGCGAAAAATGAGCCTCTGTCTGTGGCGTTGGAGGTGGCTGTCCGAGGCTGGAGCAACCAGGGCCTGCGGGACGAGCTCTACATTCAGCTTTGCAGGCAGACCACTGAGAACTTCCGCTATGACAGCCTGCAGAGAGGCTGGGAGCTGATGGCCATATGCCTGGCATTCTTTCCTCCAACACCTCGCTTCCACAATTATCTGGAAGGATACATCTACAGGCACATGGACCCGCTCAACGATACCAAAGGAGTGGCCATCAGCAGCTATGCGAAGTACTGCTACCGCAAACTACAGAAGGCTGCACTAACTGGAGCTAAAAAGGGTTTGAAAAAGCCTTGTCTGGAGGAGATAGCTTATGCCCGCAGTGCCATCTTTAGTCCCTCTATGTTTGGCTCTTCTCTGGAAGAAGTGATGGCTATGCAGAAGGAGCGTTACCCTGACCACCAGTTGCCATGGGTACAGACTCGTCTTTCGGAGGAGGTGCTGGGTCTGAATGGAGATCAGACTGAGGGCATCTTCAGGGTGCCTGGAGATATAGAtgaagtaaatgctctaaaaatgcAAGTGGACCAATGGAAGGTCCCAACAGGCTTGGAGGACCCACATATCCCAGCATCACTATTGAAGCTGTGGTACAGGGAACTGGAGGAGCCAGTCATTCCCCATGAGTATTATGAAGAGTGCATCTCTAACTATGACAGTCCTGAAGCTGCAGTCAGTGTTGTTCATAACCTTCCTCACATCAACAAACTGGTGCTCTGCTACCTCATCCGATTCCTACAGGTATTTGCTCAGCCTGCCAATGTGGCTGTCACAAAAATGGACGTGAGTAACTTGGCAATGGTGATGGCCCCAAACTGCCTGCGCTGCCTGTCCGACGACCCACGCATCATCTTTGAGAACACCCGCAAAGAGATGAGCTTCATCAGGGTCCTCATTCAGCACCTCGATACAAGCTTCATGGATGAAGTTCTATAGCCCacatcacacaaaaaaatcacatctaTACACAGACAAATACTCCAAACATCTCCAATCTATACATAAATATTCCTAATGATTCCCTCTGATCAGttaaatgatataaaatacataaacacaacTCAACGTAAAATAATGATAGACAAGCAAAACAGCCAATCTCTGTAGTCATCTGAACAGTATGCATTGGCATGGTCCTAAATTCAGCACACTGGCACACTCACAAAAAGCACAATTTTAATATCTGTCtaacgcaaacacacacacacagacacacactgacagGACTGCACATGCATTCCTTTTCTGCCCCTTTATGAGTTCTGAATGTGTTTGAGTGGAGCTGTCTGTCCATTTAACAACAGTGAGTTTCTGATtgttttgtgtgaatgtgtgtgtgttttttgtccgTTACTGTTTTTTAACTTGACTGACCTATATAACTTGATTTTatatgattaatttattttttatttattttaacgaGTGTTTATATCTACTGCCTTTATGAGACATATTGTCAGCCTCATGTcaagtgtgggtgtgtgggtggatGTGTGTTTGCctgagtgtgtttatatgtatgcatatgtgtatgtacagtatatttcacCTAACTGATCTGTCCATGTCATGTCCTGTCATGGCAGCTATTGTGAGGTTGGACAagctttactgaaaaaaaaatatctatattttaaatacatttatgttgTCACCAGTCACCAATCAAATTCAACACCTGTGGGAAATTTTGGatgttttagtgctttccaaCTGAGGGATTGAAGGGTAGACGTATGAACTGGGTGAAAGAATTTTATGTTCtatttaccttaaaaaaaaaaataataataaaacatacacaGGTAAGGCACCCACACCAAACATATTGTTTGGTATTGTTGGTCAGTTATATTGTTGGTCAAGTAATTGGGAGAATGGCATCTGTCTTTCAGCTACTACACTATATTACTTTGGTGAAGCATGCACATTTTTGTAAGAAAGGCACCACGCTCAATAAACTTGTGCTCCATAACCTACTGCAATATTACTCAACCAGCTCAGGCAACGTACTTCTTTTATATGTTGCCTTTGCCGAGTGTTTTCTTTCAGCTTGTCAGTATATTCACATGTACAGTTGTCCATGAGGGGCCACTTAAATTACACTCCCCAACTCTACTGCTTGATTTAAAGAAGCACTATGCTTTTTCTGCCAATGTCCTAAGCATCTCAGACCAAAACAAATGCTTTGTAGTTATCCATGTTTTCTTGCTCCCGTCCGCCTGCTCCAACCCTGCCAAACAAAGGGCAtatgctgtgtctgttagcattgcgtCTTCAACCCGGCTAAGGCCAATCGTTAGCATTGCTGCTAATCCATTCCACCCATTACTTTTCTGTTGGTGTTGCAACTCCAACCCTGCCGAGGCTAACTAGCATTGTGGCTTTTCTAGTGCACAAATATAATTGGAAACTGAATAATGTTTTCTGAAACTGTGTGCTACAGTTTGTTACAGTTGCTTGTAAATTGCAATTTGTCCAACCTCTCAACAGCTGGTACGACAGAATACAGTTGAGGACAGGACATGAATTAGTAATTTGTTCTCACTTTTGATTGCTTTAACATACCACTTTGTATGACACACTGGATGGCTATGATGGAACGCCACCTTTTAACACCTTTCCCAACCTTCACAAAATCAGTCTCTGAActacacacaaatataaaccgTCACATACATTCTCTACACCTATGGTCTTTAGCCCTGGTATTGGAGGCCCACAGCTCTAAGCATGTTTGGTTTATTCTACTTTCAACTTAGTCAGAACAGGTGGTTGGGTTGAACAGTTAGGTCAGGTGTGCTGGGAGAAGAACAGGCATCAAAATGTGCTGAACAGTTGGCCTCCAAGACCAGGATTAgaaactgacacactgattaggCTTGGtgcttaaaataatgtaacacaCTGCCATACACACAAAACGGATACAAGGTATCCTCACTTCCCCTCAGGAgaagcaaaaaaagagagaataaatggAAGTTTTAGAAAGActgagatggagagaaaaatgagagagagatcacGGCAGACAATAAAATGTTGGTTTTCtccatatttacatatatttgaatCTCATGGCCACCATTTTCACCTCCTCatctattaaatataaaaataatgacaaaaataaataaaaaatatatatataaaaaatacagtaaataaaaagtaatgtcATGAACTAGAGGAACACTGTAATATTTGACAGTAAATGGGCCAAAATCAACTAAAGCTTAGGTTTGGttctcatttttaataaatcaaaaCTCCATTAGCAGAAACCTGTAGGggaaattaaacaataaaaaatataaagaagacAATTAAACTGTGTCTAATTAAAATCAATGAAAACTTTTTAAGAGCAAGAGCTGAAAAAAGATGAAATGCTCCTGAGCAGATCACTGTGACCAGCATCCTCAgagcagaacacacacaaacaaacactacACAAAACACCACATACACAAACGCAAatactgactctctctctctctctcacacacacacacacacacacacacacctacacatgCACGCACCcgtacacacacagctcatctgGCACACAGACAGGAGAGGCGGAAGCCTACAAAGAAAGTGAGACAGTTCTGCTTAGATGCTCGTCTGCTTGTGCTCCTGTCTGAGATTAGGATGGTTTTATTCTGTTAATGGAGTCATGCTGAGAAAAAAACTCTCCCTCCTTTTGTTCTGAGGTGTAATGGTGATTCTGTAAGGTGGGTTAAGGTCTAACtgaatattgtttaataaacaGTTCAAAGAATA

Function

symbol description
arhgap39 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; and lens. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

NR:

description
PREDICTED: rho GTPase-activating protein 39

GO: NA

KEGG:

id description
K20649 ARHGAP39; Rho GTPase-activating protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665643.1 True 5867 mRNA 0.46 11 70648513 70702789

Neighbor

gene id symbol gene type direction distance location
dusp10 dusp10,LOC107710641,LOC107559105,LOC107568217,LOC107739190,LOC107704023 coding upstream 142945 70489394 ~ 70505568 (+)
taf1a taf1a coding upstream 164810 70477060 ~ 70483703 (+)
aida aida,LOC107710640,LOC107568227,LOC107704043 coding upstream 197840 70438733 ~ 70450673 (+)
wasf1 wasf1 coding upstream 214335 70329887 ~ 70434178 (+)
mettl24 NA coding upstream 349502 70243539 ~ 70299011 (+)
tsta3 tsta3,LOC107672947 coding downstream 2504 70705293 ~ 70726380 (+)
pycr3 pycrl coding downstream 31861 70734650 ~ 70740593 (+)
eef1d eef1d,LOC107655838,LOC107728121 coding downstream 38640 70741429 ~ 70750818 (+)
LOC103036403 LOC108443229,LOC108261142 coding downstream 51460 70754249 ~ 70777780 (+)
LOC103037005 NA coding downstream 75080 70777869 ~ 70821292 (+)
G32103 naprt non-coding upstream 25355 70622440 ~ 70623158 (+)
LOC111191258 NA non-coding upstream 174590 70471152 ~ 70473923 (+)
G32023 NA non-coding upstream 177781 70467530 ~ 70470732 (+)
G32020 mia3 non-coding upstream 185380 70460317 ~ 70463133 (+)
G32021 mia3 non-coding upstream 189287 70457320 ~ 70459226 (+)
G32139 NA non-coding downstream 91770 70794559 ~ 70796103 (+)
G32174 LOC108410406 non-coding downstream 243185 70945974 ~ 70959757 (+)
G32210 ccnk,LOC107560198 non-coding downstream 400436 71103225 ~ 71105791 (+)
G32219 NA non-coding downstream 426901 71129690 ~ 71132041 (+)
G32379 NA non-coding downstream 558516 71261305 ~ 71291859 (+)
G32105 naprt other upstream 8774 70628932 ~ 70639739 (+)
G32009 cdc40 other upstream 319485 70303036 ~ 70329028 (+)
G31939 NA other upstream 448771 70196925 ~ 70199742 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1486630 69007441 ~ 69161883 (+)
G31702 fam84a other upstream 1820941 68826643 ~ 68827572 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 154022 70856811 ~ 70867643 (+)
G32198 NA other downstream 371059 71073848 ~ 71075886 (+)
G32225 NA other downstream 434723 71137512 ~ 71141184 (+)
G32229 NA other downstream 464735 71167524 ~ 71169556 (+)
dab1 dab1,LOC107581465 other downstream 760311 71463100 ~ 71980363 (+)

Expression


Co-expression Network