LOC111191362 (LOC108416099,LOC107559745,LOC107712833,LOC108248366)


Basic Information

Item Value
gene id LOC111191362
gene name LOC108416099,LOC107559745,LOC107712833,LOC108248366
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72654819 ~ 72679083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022666138.1
GTGGAATGGATCTGTGAGTTGATTTACCAATAGTGCCAGGACTTGCTTGTTTTGAACCTGACAGTTCTATGGTTACTTCATTTTTATGTTAATCTTTTAATATTGCCCTTGAGAATATCTGGTTCTTTTCTGTGACAtcaactaaactaaactcaaaCTCCCCCAGAATCCCTCCTTCTCACATCCCAGGACAGACTTTCAGAGGCAGGGCTTGTTTCTCCATGCAGTCGACTGGAACAGTTCAAGGCTTAAAGGTCCTGGATGTGCTCTTGCTCTTTCAGGTATTTTAAGTAAACGATGCtcctgcttctgctttcagaaaATGAAAGGAGAAATAGGTAGTAGAGTTTTCACTTCAtcattaagtaaataaaatgatcaagcTGATCTAAAGTGTGTGCTCCCATTCCCTTGCCTTTCCCTCTGCTGCCTGCATGTAttatgatattcaaattttgaaTATCATAACTATAACACAATACTTGTAATTTTACTTTCAGGCAAACAGTGTTGAATACTTTAATACTTACATTTAAGGGTGGTGCTTCAGGAACACTTCtcctcaagtcacttttttgatagagcacctgtacttttactcaagtctgggtctctagtgCTTGATACATACCTGCATATTTCCTCCTGTAAATGAGCTGGTTAATTATATAATGCAATTATGACTAACCTGAAAGCCAGATTGAATAGTCTACAGTAGTATcatttaatacaataatacataaAGTACATGTCATTTCAAAAGGTTCTCCGTTCTTATGAGTTTGCTTTTGAAAGGTAGCATGTTAAGAGTTTCCTTCCCAAGAGCACAAGTCCATTCTTTGTGTTCGTATTGAGAAATACCCAACGCCTCATACCAGAAATACCCAGTCGCACTTCTCTGACTAAACACTGCAAGACTTTAAAACTTCAGCACGAGACCAAATAGTAAGAGATGAACTAAATGCGAGGGAATCTCATCGCGCGCCTTCTCCACAGTCTTGTGAATAAAACACACGCGAGCGCGCGCGGCCACTCAGTCGCTCTGCTAATCAATTTAGCGGCAGATGTGCGAGAATAATAGATGAATGTGATGTGTAATCCAACGCACCTGCTCCTTCACCGGAGCCCCCATTCGGCCTCAAACGGGCTCGCGCTGCAATGAAAGCGCTTTAATTAAAAGGCCACTGAGGCGGAGCCTCTCATCAGGTCCACGCTGCTATTTATAACGGCGAACAGCAGCGCGCGCTTCTGACTCCTGCCTGCTTCACCACGCTTCGTGCAGCGCGCGCCCATCGTACACATACATATATCCTAGCGTAAAATCGAGCTCGTCCCTTAGTACTATTTCATTAttcgtatttatttattaatatatttgatttGACAGGTGTTCCTCGGCTACTTTAGACAACACATGCAGCTGTCACTTCTGATGTGATAGCTTATTTAGAGGGGGGCGTGGCGACGTGTCTGAAACCGCGCTCTACTGTTGCGCATGCGCCGTCACGTCGCGAGAGGGGAGTCCCGGACCGTGTTTAACCCCTCTTTTGGGGGCCGAGCGCTATAATACCGCACGCGCCGCTGGAGGTCCTGCACACCCCCTCAGTACTTAAACTCCACAACACGAGCATCATCCCCCCCCTACACATACACTTTTATGTATATTAACATAGATATATACAACCTCGCAACAACCTGAGGAGGGGgaagctgctgttgctgcttcacgcgcacacacgcgcgcgcTTGACTGCTCTGGCTATTTGCGCGCCTCTGTCGCGCGGCGCACGGCACTCGCGGCGCGTGCGGCAGTCAGGTCAGTCCGCAAGCGGTGGACACCGAGCGTGGAAAAGGAGGAGTGGAGGCGGGGTAACGacagagtgggagagagagtttgtgtagGATAGAGAGACtgtgaatgtgtatgtgagggagagagagtaagagagagagagcgcgtgtGTGCGAGCGAGTGCGCGCGCGCGTGCGCTCGTTTCCTCTATGCCGTCGGCGCGAGCAGGGAGAGGAGTCGGCGCGCGGCGTTCGTGACGGCGAGAGAGGCGCGCGCGGCTGCGGGGCGGATGGATGGCCCCAGtatggaggaggagggggaggtggGGGCTCCGCTCCCTCGCGTCCACACGCGGCGGCGCAGGAGCCGCTGGCTGGCCCGCACGCCGCTCGCGCGCGTCCCCTGCGAGGACGAGTTCGAGTGCCGCGAGCTCGAGGGCCTCTTCCAGAAGTACAACCTGAAGCTGGAGCAGACCGCCACGCTCAAGGCGCTCGCCGTGCTCATTCTGGCCACGTCGGCGCTCGCGCTCGTCGAGCTGCTGTCGGTGGGCTCGCGCTTCACCGTGTCGGCGGGCTCGCACCCGGTGCACTGCGTCATCTTCGCCTCGCTCTTCATCGTGGCCAACGTCAAGTACCTGCAGGTGACGCAGCTGCAGCAGATCGCGCGCCTCGCGCTCCTCTTCAGCTTCACTTTCGCGCTCCTCTGCTGCCCCATCCCGCTGGCGCTTGCGCGCGCGCCCCGGACCCACGATACCGATGCTGCTTCCGCGGCGGGAGCGGCGTCGTCGGGGAGCTTTGGGTCTGCAGTGGCGGCAGCGGCAGCGACCCCCGAGCAGGGCGTCTGGCAGCTCATGCTCGTCACGTTCGTGGCGTACTCGCTGCTGCCCGTGCGCACGCTGCTGGCCGTGCTTTTCGGCGTGCTGGTGGCCGCGTCCCACTTCATCGTGACGGCCACGTCGGTGACGGCACACAGGCCGCGCGTCTGGACTCCGcTGGTGGCGAATGCAGTGCTGCTGGTTGGTGTGaacctgtctggtgtgtttgtgcggGTCCTCACTGAGCGTGCCCAGAGGAAGGCCTTTCTACAGGCCAGGAACTGCATCCAAGAGCGCCTGCAGCTGGAAGACGAAAATGAAAAACAgGAACGCCTCCTAATGAGTCTGCTGCCCAGAAATGTTGCCATGGAGATGAAGGAGGACTTTCTTAAGCCACCAGAAAGAATCTTCCACAAGATCTACATCCAACGGCATGACAACGtcaggtagagaaagagagagagagagagagagagagagagagagagagagagagagacaaagagagaggagaatctTTATAACATGTAAAACAGAATTGCAG

Function

NR:

description
PREDICTED: adenylate cyclase type 1-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022666138.1 True 3150 mRNA 0.53 3 72654819 72679083

Neighbor

gene id symbol gene type direction distance location
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding upstream 18571 72627240 ~ 72636248 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding upstream 44637 72604213 ~ 72610182 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 87364 72559357 ~ 72567455 (+)
LOC111191956 NA coding upstream 446683 72206947 ~ 72208136 (+)
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding upstream 570574 72036206 ~ 72084245 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding downstream 63935 72743018 ~ 72777057 (+)
tdrd6 NA coding downstream 107913 72786996 ~ 72803789 (+)
LOC103024428 LOC103024428,LOC108440977 coding downstream 136559 72815642 ~ 72822277 (+)
LOC103025272 LOC108440976 coding downstream 144476 72823559 ~ 72831615 (+)
LOC103025777 mep1a coding downstream 154330 72833413 ~ 72847814 (+)
G32644 NA non-coding upstream 28134 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 59141 72565009 ~ 72595678 (+)
G32579 NA non-coding upstream 291478 72362951 ~ 72363341 (+)
G32570 NA non-coding upstream 331813 72322661 ~ 72323006 (+)
G32556 NA non-coding upstream 412008 72242485 ~ 72242811 (+)
G32713 NA non-coding downstream 18366 72697449 ~ 72697765 (+)
G32716 NA non-coding downstream 22439 72701522 ~ 72701806 (+)
G32769 NA non-coding downstream 162768 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 197961 72877044 ~ 72877730 (+)
G32787 NA non-coding downstream 265731 72944814 ~ 72945464 (+)
G32641 NA other upstream 57882 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 157755 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 674456 71463100 ~ 71980363 (+)
G32229 NA other upstream 1485263 71167524 ~ 71169556 (+)
G32225 NA other upstream 1513635 71137512 ~ 71141184 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 102710 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 465567 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 759973 73439056 ~ 73506987 (+)
selp NA other downstream 1309418 73988501 ~ 74016347 (+)

Expression


Co-expression Network