pdc (pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454)


Basic Information

Item Value
gene id pdc
gene name pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73879666 ~ 73884428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022666412.1
AAGGCTTGTAGTACTGGACAGTGACCATATAGCAGGCCAGAGGGGGTAACTTCAAGAGAAGGGACTCTTTCTCATACACAACAGaaaacaaaatgtCTGGCAGAGCagtagaggaggaggaggatgctTCTGTGACTCACACAGGACCAAAGGGAGTAATAAATGACTGGCGGAAGTTTAAGTTGGAGAGCATGGATCAGGAGGCTTTGCCTCCTAACAAGAGGGAGCTGCTGAGACAGATGTCATCCCCACAGAAGCCAAATGAGGGTTCCTTGGGTAGCCTCAACCGCAAGATGAGTGTCCAGGAGTATGAACTGCTCAAGGAGGATGACGAGCAGTGCCTGCGCAAATACCGCAAGCAGTGCATGCAGGAAATGCATGAACGCCTGAGCTTTGGGCCCAAGTTTGAGGGAGTGTATGACCTGGAGAATGGTGAGGCCTTTCTTGAAGTGATAGAGAAGGAGCATAGACTCACCATCGTGGTGGTGCACATCTACAAGGAGAGTGTCAAGGGCTGTGACGCGCTCAACAGCTGCCTGGACTGCCTGGCTGCCGAATACCCAACCGTCAAGTTTTGCCGCATCAATTCAGCCGTCACAGGCGCAGGGGAACAGTTCTCTGATGACGTGCTACCGGCTGTGCTGGTGTACAAAGCCGGAGAGATGCTGGGGAACTTCCTAGCTGTCACACAGCACTTCAACGAGGAGTTCTTTGCCACCGATGTGGAGGCCTTCCTCAATGACTACGGACTGCTCCCTGAGAAAGAGCTCAAAACAGGCGATGAAGAAGCGGATGTGGAGTGAAGGAGACTGGAGAGCAATGGAAGGAAGAAGATGCTCGGAAGTTTTACTATATCTCAGGTCAACAGGCTTCTAAGAAAAGCAGCACAACCAATGCTGATCTAGGGAGCAGTCTTTGTAGCCTGTGTGCACTGTGTTACCACTGTAAGATACATGGTAATTCTTCTTTTTCACTAGACAGtaaatttgccagtgttaaatcaacatcattggtgttaaattaacactgttttcTCTGTAGGTCTACTTCAGGTTCATGtttttattatttttttagagctaaataaataacatgTATTCATTAAACATGTCAACAGTCACCTGAAAGACCAACTAGAGACCTTCAGTAGAAAATTCTAAACTTTTTGAAATACCTTAGAAAATTTGTATGATGTATCAGAGAGCAAACATTATAAATACTTCAGTGATATCTTCATATCTAGTGCCATGTGATCTATTTGTGTGTTCATGATATTGAATCATGTGATGTTTATAAATCTGTTGGTTTGCATGGAATGTAAAAGGTTATATGAAGAGTCAGAGAAGTCTATTAAAGgcattttattttaggtttccatggataaagaaaaatcatggcATAAAAACATAATGCACAGACAAGGATCCAAATGAGCCCAAGTGAATCTTCCACAAACCAtttgacttaaaaataaagtaaaatgtagGTCTGACTGTAAAAAGAAACACTTTCTATTACTCATTTCTAGTTTCATTACTATTAATTCGACATGTCTGGTCTCTTTTACTTATGGCATCTGACTAATAGAACAGCTACAGTCCTGCAAATGCCATTTCACACATTTGTGGTGAAAATATGGTTGAAGGAAGCATGTGATAACTGACTTTTTCCTTTCACAGAGGTTTCAGAAGCAAGATTGCACTTGCTAAGGAGCCGTGCTATCTCTACACTTGTATTTTGCATGACCCTATCTGGGTTGAAAAGTTCATGCATTACATAAAATCCAGACATAGCGGA

Function

symbol description
pdcb Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway and visual perception. Orthologous to human PDC (phosducin).
pdc Predicted to enable phospholipase inhibitor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and phototransduction. Predicted to be located in several cellular components, including cytosol; photoreceptor inner segment; and photoreceptor outer segment.

NR:

description
PREDICTED: phosducin-like

GO: NA

KEGG:

id description
K08327 PDC; phosducin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022666412.1 True 1797 mRNA 0.43 5 73879666 73884428

Neighbor

gene id symbol gene type direction distance location
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding upstream 58843 73814970 ~ 73820823 (+)
opn5 opn5 coding upstream 632481 73219526 ~ 73247185 (+)
LOC103025777 mep1a coding upstream 1031852 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 1048051 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 1057389 72815642 ~ 72822277 (+)
LOC103035930 tpr coding downstream 23434 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 61650 73946078 ~ 73954704 (+)
sell NA coding downstream 115155 73999583 ~ 74004379 (+)
LOC103039489 NA coding downstream 212751 74097179 ~ 74126080 (+)
G32961 NA non-coding upstream 242974 73634296 ~ 73636692 (+)
G32960 NA non-coding upstream 246037 73630287 ~ 73633629 (+)
G32959 NA non-coding upstream 258799 73620566 ~ 73620867 (+)
G32951 NA non-coding upstream 287355 73592077 ~ 73592311 (+)
G32949 NA non-coding upstream 308288 73570993 ~ 73571378 (+)
G33041 NA non-coding downstream 48731 73933159 ~ 73933805 (+)
G33043 NA non-coding downstream 50718 73935146 ~ 73935885 (+)
G33051 NA non-coding downstream 71456 73955884 ~ 73960904 (+)
G33054 cunh1orf112,c25h1orf112 non-coding downstream 82791 73967219 ~ 73970910 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 372679 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 683446 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 1093303 72781793 ~ 72786363 (+)
G32641 NA other upstream 1282729 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 1382602 72403534 ~ 72497064 (+)
selp NA other downstream 104073 73988501 ~ 74016347 (+)

Expression


Co-expression Network