LOC103039489


Basic Information

Item Value
gene id LOC103039489
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 74097179 ~ 74126080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022666519.1
GCTTGACCCTCTTCGGCGCTCGTAGATTTACGGTAAAGCAGGACGTGTTCGTACTGGGTTTGTAGTTTTTGTAGGAAATGTTTTGAGCAGCGCTGAGATGGTGTCACAGATGTGTTGACTCGGTGTTTTAGTTCAGTTCTCTCTGGTTTAAGCGGCACTGATGTATCCGAGGAAGAATGTCGACGGATCTGTTGTTAGACGTCGAGGCTCCACCGAGACGGAGTCAGTGCGAGGCGATGAACAGGGAGCCGGGGGAGCCGATCTCCGACATCTCCATCGACCAGGACGGAGAGTGGGATATCAGTTTGTTTGATGAGCTGGGTGACCTGGGCGATGCTGAGGAGCTCCTGCGGGCTCTTGAGGGCGCTAGCTATcTCGGCGGTGCAGCTGATCTGAACTTCGACATTGGTCTGCCTGTGTGGAACTCTGATGGCTGGGGGGACACCAGCAGTATCTGCACAGATGGAGATATGTCAGCAGATTCTCTCTCTCCGAACCACACACTTAGTTCAGTGTCTTCACCTAGGTCAGTGGAGGCCCACTCACCATATTCTCTACAAGATGAAGCTCTATCTCCACTCTCTCCTCAGTCACAGCACTCTCCGATGTCTGTCTGTTCAGACTCGAGTGGCTTTATTGATGCTCCCCCTGAGAAGAAGCCAACCAAGAAGAGCAGTCAGACAAGAGCTAAGCCTCTCCAGCTGGCAAAAAGGCCCATTCATCTGAGTCCTAAAGTTTCCATCCAGCCCAAACCAATCATCACTGCAGTGCCTATCACACAGGCCACAGCTCCACTTCAGGCCAAAACCATCATCATCCAGCCCCTCCAGACCACCATAATGCCTGTGGTCAAACCTCCACCAGTGACCATTCAGCCAGCACCCCCTACAGgCCGTCCCATCTTGCTGTCTCAGCCCACCCAGGTGCTGCAGCTCCAGCCCCCTCAGGCAGTGCCTGCTCGTGTGCTCACCATGCCCACCATGGCTCAAGAGAGGCCTGTTAACCTCTCTGCCCCTGTGGTGCCCCCGCCTGTCGTAACAGTCCCTTTCCAGAACCCCACATCAGACGACGACtCCAACGTTTCGAGGCGGCAGCAGCGGATGATTAAGAACAGAGAGTCAGCATCTCTCTCacgaaagaaaaagaaagagtacCTGCTGACGTTGGAGTCCCGGCTGAAAGTGGCGCTGTCTGAGAATGAAAAGctgaaaaacgagaacgggacTCTGAAGAGGCAGCTGGAGGGCCTGATGAGTGAGAACACTGTACTAAATGCTACTGCTCCAAAGAGGAGGGCAGTGTGCCTCATGGTAGTCCTGGTTTTCCTGTTCATCAACATAGGTCCAATGAGTTTGTTTGAAGGGCGAACAGAATCTGAGTTCACAGCAGGGCCCAGTTCGAGTGGCAGGCACCTGCTGGGCTTCTCTCCAGAGATAGACAGTGGCCTAGGAGGCAGCGCGTCTGACTCTGAGCCACCTCATACCACACACAGGTAACACACTCTCTATTGaa

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022666519.1 True 1512 mRNA 0.54 10 74097179 74126080

Neighbor

gene id symbol gene type direction distance location
sell NA coding upstream 92800 73999583 ~ 74004379 (+)
scyl3 scyl3,LOC104956565 coding upstream 142475 73946078 ~ 73954704 (+)
LOC103035930 tpr coding upstream 165811 73907862 ~ 73931368 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding upstream 212751 73879666 ~ 73884428 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding upstream 276356 73814970 ~ 73820823 (+)
G33054 cunh1orf112,c25h1orf112 non-coding upstream 126269 73967219 ~ 73970910 (+)
G33051 NA non-coding upstream 136275 73955884 ~ 73960904 (+)
G33043 NA non-coding upstream 161294 73935146 ~ 73935885 (+)
G33041 NA non-coding upstream 163374 73933159 ~ 73933805 (+)
G32961 NA non-coding upstream 460487 73634296 ~ 73636692 (+)
selp NA other upstream 80832 73988501 ~ 74016347 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 590192 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 900959 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 1310816 72781793 ~ 72786363 (+)
G32641 NA other upstream 1500242 72595906 ~ 72596937 (+)

Expression


Co-expression Network