LOC103021778


Basic Information

Item Value
gene id LOC103021778
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37633781 ~ 37637628 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667417.1
atttcgatcatttaaacagcctgaaattttttttaaaaaaaaagctaagttTTAACGCTCTACAATTCGATTTTAATTCGGGCTTGGGCTCAAAATGGCAGTGTACGGGGCGGGGCGGACTCCGGCTGAACATGCACGGCTGTGGATGAGGTTACAACTTCAGAGAACCCACAGCATGTCGAGTGATGTGAACAGGAAGGCGGTTCTCCGCACCACCAAAGTTAGAACAGCACTGAAGAAGGATGGCAGCTGGATCCGCCGGAGTACTGACCAAGAAGACCCCCCTCCACCACTTAAGCCTGTAGTTTTGGCTAAGCCTCTTTCACCCACAGTGAAGTCCAGCACCACGTCCACCCCAGAGACACTACAAAGCCCTGCCCCTCAGACTTCCTCCCCTTTAAGCCCCGCCCCACAGACCACTTCGACTTTAAGCCCCGCCTCACAGACTACTTCCCCTTCAAGCCCCACCCCACAGACCACTTCCCCATCAAACGCTGCCCCTCAGATAATTTCCCCCTCAAACTCCTCCCCTCAGATGACTTCCCCTCCAAACGCCACCCCTCAGACAAGTCCCACCTCTGGTGCCAGCCCCAATCCTCCTACAGAAGCAAAAGGCAGGGTGGGTGGCTCATACGTGCTTTCTGCAATGAGGAAGTTTGAGTAAGTATTAAATGCACACAGGCATTTAGAGGGAAAGTTACATTGTGTTTTGTATTAGCATGTCACATAA
>XM_022667422.1
aggaaGGAATGAACTGATCAGACTGGCTTATCTCTTTCTGATAGTGCTTCCTCACTTTCACATACACACGTACAGCAGACATCACAGCACAGACACTCTCACAGGTTACAACTTCAGAGAACCCACAGCATGTCGAGTGATGTGAACAGGAAGGCGGTTCTCCGCACCACCAAAGTTAGAACAGCACTGAAGAAGGATGGCAGCTGGATCCGCCGGAGTACTGACCAAGAAGACCCCCCTCCACCACTTAAGCCTGTAGTTTTGGCTAAGCCTCTTTCACCCACAGTGAAGTCCAGCACCACGTCCACCCCAGAGACACTACAAAGCCCTGCCCCTCAGACTTCCTCCCCTTTAAGCCCCGCCCCACAGACCACTTCGACTTTAAGCCCCGCCTCACAGACTACTTCCCCTTCAAGCCCCACCCCACAGACCACTTCCCCATCAAACGCTGCCCCTCAGATAATTTCCCCCTCAAACTCCTCCCCTCAGATGACTTCCCCTCCAAACGCCACCCCTCAGACAAGTCCCACCTCTGGTGCCAGCCCCAATCCTCCTACAGAAGCAAAAGGCAGGGTGGGTGGCTCATACGTGCTTTCTGCAATGAGGAAGTTTGAGTAAGTATTAAATGCACACAGGCATTTAGAGGGAAAGTTACATTGTGTTTTGTATTAGCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667417.1 True 730 mRNA 0.51 4 37636336 37637628
XM_022667422.1 False 674 mRNA 0.52 4 37633781 37637618

Neighbor

gene id symbol gene type direction distance location
igbp1 igbp1 coding upstream 115914 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 129828 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 143548 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 630006 36983182 ~ 37003775 (+)
stard8 stard8 coding upstream 836885 36672971 ~ 36796896 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 331606 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 347084 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 706761 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 743962 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 779122 38416750 ~ 38427918 (+)
LOC111191733 NA non-coding upstream 13511 37616778 ~ 37620270 (+)
G24237 NA non-coding upstream 21180 37612171 ~ 37612601 (+)
G24231 NA non-coding upstream 48491 37582120 ~ 37585290 (+)
G24228 NA non-coding upstream 56889 37571254 ~ 37576892 (+)
G24219 taf1,LOC108412743,LOC107596195,LOC105893216 non-coding upstream 81528 37551538 ~ 37552253 (+)
G24242 NA non-coding downstream 8450 37646078 ~ 37651113 (+)
G24253 NA non-coding downstream 84308 37721936 ~ 37724137 (+)
G24271 NA non-coding downstream 125747 37763375 ~ 37764318 (+)
G24317 NA non-coding downstream 217814 37855442 ~ 37857225 (+)
G24324 NA non-coding downstream 225734 37863362 ~ 37864909 (+)
ar ar,LOC108443198 other upstream 1174852 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1537055 36043431 ~ 36096726 (+)
trdn NA other upstream 2331434 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3669273 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 3853878 33777942 ~ 33779903 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 290727 37928355 ~ 37933989 (+)
G24390 NA other downstream 455346 38092974 ~ 38098324 (+)
G24431 NA other downstream 594965 38232593 ~ 38237041 (+)
G24463 NA other downstream 721707 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 721832 38359460 ~ 38379336 (+)

Expression


Co-expression Network