LOC107196798


Basic Information

Item Value
gene id LOC107196798
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 483139 ~ 494369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667468.1
ATTACTGCGGTGTGCTAAGAACGAGTCCTCAATGAACAAAGTTGAACATTGGCTTATTTCTGAGatgaaaaaaaaagaaacctgcAATTAAAAATGCAGATCCCTGCACAACTGCAAAGATGGTTAAACAACCTCTGCACAAATACCTCATTATCAGACCTGGAAAAACACTCAAGTGTCATGAGAGCATAATGCAGTACCTTCAAAAACAAAGACCTGAACTTCAGGAGGTGTTAATAGCGGAGGAGTGTGATGTAATTCTGGCTTTCTGCCATAGTATACCACAAGGTGAAAATGACATTGAAAGAACAATGACTTTACTCGCTAGCCTACCAGGCTCTAAGCCTGTAGTTCTGATGGTGCTCCATCAGACGTATGACCCAGCGCACATTACAGATATGAGTGGAACTGTTACCAGAAGGGTTAATATGGTTAAAGTGGACTTTCTCTTCAATGAGAATGAAGAATTactgcagtgcactcaaaatgAGTCAGTTGTGCATAAAATTGCACAACTGCTAATACATAAGggaTTATTGTCACCAGACAACACAGCAGTCAGTAAAGAAATATCAACTCAACgttttcgtCAGATAAATaacaaaagtgtaaaagtgaaaGTTTTCAGTCTTGTTACTGGGAACACACTGGGCTCTCATAGGCAGTTTGTAGGAACCCTCTGCAGTCGAAGAGCAGGACTAAAGGAGGTGTCTACAGTGGAGGAGTGTGACGtcattctgtgtttctgtcccgTTGTTTCTCGAGCTGGAATTGACATTGAAGCAGCACTGCAGAAACTTAACGATATTCCAGTTACAAAGGATGTAGTTCTGGTGGTTCTCCATCACACATTTGACCCGGAGTGCACAGTTCCAGACAGCAGCAGATCTGTATCCAGAGAGAACACACTCACAGTGGACTGTCTGTTCTATGAAGATTGTGGATTACTGCACTGCAGTCAGAATGAAGAAGCTTTCAGGACAGTTTTGAAGTTGATGGACATTAAGGATTGCTGTGGGTCCAGAGCCTGGAACCTGGAAATCCCCGACTCATGGAAGAGCAACTTTCGGGACATGGCATCTAAAGGACTGGGGAAAATGAAGGCGTGGAATGAGGTGATCCCAAAGCCAAATTTGTTTTCTTCATCAGAAGCTGTAAATCTTCCAGGTCTGCCTCACAAAATCAAAGTTTTCAGTTTTGTTACTGGGAAAACACTGGACTCTCACAAGGAATTTGTGAAAACCCTTTGCAATCGAAGAGCAGGCCTGCGGGAGGTGTTTACAGTGGAGGAGTGTGACGtcattctgtgtttctgtcccgTTGTTTCTCGAGCTGGAACTGACATTGAAGCATCACTACaaaaacttaataaagtaaCACAAGGTTCTCAGCCTGTGGTTCTGGTGGTGCTCCATCACATGTTTGATGCAGAGAGCATCGTTCCTGACAGCAGCAAATCTGTAGCCGGGAAAAACACACTTGCAGTGGACTGTCTATTCTTTGAGGACAGAGGAATACTGAGTTGCAGTAAAAATGAAGAAGCCTACCGCAGAGTTTTAGCGTGGATTGAGTCTCAGtcaAACAAGGTATCAAGTTCTGCAAAACACCCTGAGGATGACACACAACTGAAGAGGTTTAAGAATGACTCCTATAGTGAGTACAAGAGAATTTATTTTACCAACCTGATTATTACACTTAAAAACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667468.1 True 1706 mRNA 0.43 16 483139 494369

Neighbor

gene id symbol gene type direction distance location
LOC107197531 NA coding upstream 15055 448393 ~ 468084 (+)
LOC111194470 mogat3 coding upstream 43575 430383 ~ 439564 (+)
LOC103030708 NA coding upstream 172275 303636 ~ 310864 (+)
LOC103033126 NA coding upstream 389247 89699 ~ 93892 (+)
LOC103033448 NA coding upstream 427039 41692 ~ 56100 (+)
LOC103028849 NA coding downstream 15203 509572 ~ 524138 (+)
LOC103023152 NA coding downstream 56674 551043 ~ 558402 (+)
LOC111191737 NA coding downstream 106059 600428 ~ 609429 (+)
cryab cryab,LOC108259721 coding downstream 943437 1437806 ~ 1442109 (+)
LOC103029064 LOC103029064,LOC108428730 coding downstream 963101 1457470 ~ 1469889 (+)
G15636 znhit1,LOC107752359,LOC107661214,LOC106567874,LOC108259938 non-coding upstream 37479 443166 ~ 445660 (+)
G15612 NA non-coding upstream 90966 318133 ~ 392173 (+)
G15566 NA non-coding upstream 205958 246855 ~ 277181 (+)
G15565 pld2,LOC108428962,LOC107661209,LOC107599219,LOC107663402,LOC107746406 non-coding upstream 254949 225524 ~ 228190 (+)
G15560 NA non-coding upstream 276036 203692 ~ 207103 (+)
LOC111191745 NA non-coding downstream 89341 583710 ~ 588307 (+)
LOC111194487 NA non-coding downstream 97859 592228 ~ 593633 (+)
LOC111194483 NA non-coding downstream 99286 593655 ~ 597730 (+)
LOC111194479 NA non-coding downstream 118668 613037 ~ 615239 (+)
G15724 NA non-coding downstream 191704 686073 ~ 705802 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 361958 70784 ~ 121181 (+)
LOC103025578 NA other downstream 828147 1322516 ~ 1340800 (+)
fdxacb1 fdxacb1 other downstream 1022128 1516497 ~ 1529417 (+)
G15839 NA other downstream 1186790 1681159 ~ 1682022 (+)
nrgn NA other downstream 1656261 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 4021628 4515997 ~ 4517309 (+)

Expression


Co-expression Network