LOC111191737


Basic Information

Item Value
gene id LOC111191737
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 600428 ~ 609429 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667504.1
TTTAATATTCAGTCTTAACACAGGCACTATAGGATTATCTACAGTGGAAGCAGGACACCGTACCAAGTCAGCAGGATCTCAGTGAGGGAATCATCATGTCTGGAACTATTCCACTGAAATACTTTGTGGATGTATCTGGACAATCCAGCAATGTTCATGAAGATTTCATGAGGCATTTTCACACAGAAGTGTGTGGTGTTCTGGAGGAATCTACAAAGGAAGAGTGTGATATAATCCTGCTTTTCTGCCCTGTTGTATCATCAGCAGAAGCAGGAATTAATCTAGCCCTACAAGAGCTCCGTAATGCtgACTCTAGACCTGCTGTTCTAGTAGTGCTTCATATCACATCTAACCCAGAGAGCACAGTACCAGACAGCAGTGAATGTGTGAACAGAGAGAATACAATTCTAGTGGATTGTCTGCTTAATTCACACAACGAGTTACTTCAGTGTCCGAGGAATAAAAACGCAATGGAGCAAATTAAAACGTGGATGATGGagGTAAACGTTAAAAAAGAGCCTCAGGATGCACAGGAAACTCATCCCCAACCAGGGGCAGAACCAGCTCCCAACACTAAAAAATCTGCTGAAGACCAGTCTGTAAAAGAACAGCTTCAGAATGCACAGGGAACTGATCATCAACCAGAGACAGAACCAGCTTTGACCAACCAGGAACCTGCTAAAGCCAATGATCAACAACTTGGAGACCAATCTGTAGAAGAACAGCATCAGGATGCAGAGGAACCTCATGATGCAAAACCAGCTCCCAACCCACAGAAACCTCATCAACAACCAGTGGCAAACCCAGATCTTAAAACTGAGAGAGTTCGTGAGAACCAGCATGTAAATGAACAGCATCACAATGCAGAGGAAAAACACCTCCAACCAGGTGTACGAGCAGAAAGTCAACCGCAAACAGGTGCAGAATCAGCTCCCAACACTGAAGAATCTGATAAAGACAAATCTATAAAAGCACAGCATCAGAATGCCAACAAAACTGATTCCCTATCAGGGGCAGAACCAACTTCCAACATGGAGGAATATGCTTCTCAATCGCTAAAAGACCAATCTGTAAAAGAAATGCATGAGGATACACATAAAACTCATCACCAAACAGAGGCAGATCCAGCTCCCATCACCCAGGAACTGGCTAAAACTGATGAGGAACAACTAGGAGAccaatctgtaaaaaaacagcatcaggaTGCACATGGAACTCATCCTGAACCAGGGGCAGATTCAGCTCCGACCACCCAGGAACCTGCTAAAACTAATGATCAACATCTAGGAGAccaatctgtaaaaaaacagcatcaggaTTCACAGGAAACTGATCCTGAACCAGGGGCAGAAACAGCTCCAACTACCCAGGAACCTGCTAAACCTAATGATCAACCTTCAGGAGACCAATCGGTAAAAGAACAGGATCAGGATTCACAGGAAACTGATCCCAAACCAGAGGCAGAACCAGCTCTGACCACCCAGGAACTTACTAAAACTAATGATCAACTTCTAGGAGACCAATCTGTAAAAGAACAGGATCAGGATTCACAGGAAACTAATCCCAAACCAGAGGCAGAACCAGCTCTGACCACCCAAAACCCTCCTAAAACTAATGATCAGGGACTAGGAAatcaatctttaaaaaaacagcatgaggATACACaggaaactgatccagaaccagGGGCAGAAACAGCTCCAACCACCCAGGAATCCGATAAAACTAATAATCAAACTCTAGGAGACCAATCTGTAAAAGAACAGGATCAGGATTCACAGGAAACTAATCCCAAACCAGAGGGAGACCCTGATCCGAACATCCAGGAACCTGCTAAAACTAATGATCAACCTCTAGGAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGGTCACCCAGCAACCTGTTAAAGCTAATGATCAACCTTTAGGAGATCAATCTGTGAAAGAAGAGGATCAGGATGCACTgaaaactgatccagaaccagGGGCAGAACCAGCTCCAACTACCCAGGAATCCGATAAAACTAATAATCAAACTCTAGGAGATCAATCTGTAAAAGATCAGGATCAGAATGCACAGAAAACTCCTCCTGAACCAGAGGGAGACCCTGATCCGAACATCCAGGAACCTGCTAAAACTAATGATCAACCTCTAGGAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAACCAGCTCTGACCACCCAGGAACCTGCTAAAACTAATGATCAACCTCTAGGAGAtcaatctgtaaaaaaacagcatcaggaTTCACaggaaactgatccagaaccagGGGCAGAACCAGCTCTGACCACCCAGGAACCTGATAAATCTAATGATCAACCTCCAGAAGACCAAgttgcaaaaaaacagcatcaggaTTCACaggaaactgatccagaaccagAGGCAGAAACAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAACCTCTAGGAGACCAATCTGAACCTGCTAAACCTAATGATCAACCTCCAGAAGACCAAgttgcaaaaaaacagcatcaggaTACACaggaaactgatccagaaccagGGGCAGAATCAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAAACTCTAGGAGATCAATCGGTAAATAAACAGGATCAGAATGCACAGAAAACTCCTCCTGCACCTGAGGGAGACCCAGATCCGAACATCCAGGAACCTGATAAAACTAATGATCAGCCTCTAGAAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGATCATCCAAAACCCTCCTAAAACTAATAATCAGCAACTAGGAGAtcaatctgtaaaaaaacaacatgaggATTCACTGGAAACTCCTCTCAAACCAGGGGCAGAACCAGCTCTGACCACCCAGGAACCTGATAAATCTAATGATCAACCTCTAGAAGACCAAgttgcaaaaaaacagcatcaggaTTCACaggaaactgatccagaaccagAGGCAGAAACAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAACCTCTAGGAGACCAATTGGTAAAAGAACAGGATCAGAATGCACAGAAAACTTCTCCCGAACTAGGAACAGAACCAGCTCAAACCACCCAGGAACCTGCTAAACCTAATGATCAACCTCCAGAAGACCAAgttgcaaaaaaacagcatcaggaTACACaggaaactgatccagaaccagGGGCAGAATCAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAAACTCTAGGAGATCAATCGGTAAATAAACAGGATCAGAATCCACAGAAAACTCCTCCTGCACCTGAGGGAGACCCAGATCCGAACATCCAGGAACCTGATAAAACTAATGATCAGCCTCTAGAAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGATCATCCAAAACCCTCCTAAAACTAATAATCAGCAACTAGGAGAtcaatctgtaaaaaaacaacatgaggATGCACTAGAAACTCCTCTCAAACCAGGGGCAGAACCATCTCTGACCACCCAGGAACCTGCTAAAGTTAATGATCAACCTCCAGAAGACcaatctgcaaaaaaacagcaacaggaTCCACAAGAAACTGATCACAAACCAGGGACAGAACCAGCTCAAACCACCCAGGAATCTGCTAAACCTAATGATCAACCTCTAGGAGACCAATTGGTAAAAGAACAGGATCAGGATGCACAGAAAACTCCTCCTGAACCAGGAACAGAACCAGCTCAAACCACCCAGGAATCTGCTAAACCTAATGATGAACGACTAGAAGAccaatctgtaaaaaaacaggatCAGGATGCACAGAAAACCACTCCAGAACCAGATGCAGATGAACAACTAGGAGACCAATCTAAAACAAAACAGCTTGAGGATTCAAAGGAAACTGATCCTAAACCAGAGGCAGAATCAGTTCTGAGCACTCAGCAACCTGCTAAACCTAATGATCAAACTCTAGGAGATCAATCGGTAAAGAAACAGGATCAGAATCCACAGAAAACTCCTCCTGCACCTGAGGGAGACCCAGATCCGAACATCCAGGAACCTGATAAAACTAATGATCAGCCTCTAGAAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGGTCACCCAGCAACCTGTTAAAGCTAATGATCAACCTTTAGGAGATCAATCTGTGAAAGAAGAGGATCAGGATGCACTgaaaactgatccagaaccagGGGCAGAACCAGCTCCAAATACCCAGGAATCCGATAAAACTAATAATCAGACTCTAGAAGATCAATCGGTAAAAGAACAGGATCAGAACGCACAGAAAACTCCTCCCAAACCAGAGGGAGACCCTGATCCGAACATCCAGGAACCTGCTAAAACTAATGATCAGCCTCTAGAAGACCaatctataaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGGTCACCCAGCAACCTGTTAAAGCTAATGATCAACCTTTAGGAGACCAATCTGTGAAGGAAGAGGATCAGGATTCATTGGAAACTCCTCTCAAACCAGGGGCAGAACCAGCTCTGACCACCCAGGAACCTGATAAATCTAATGATCAACCTCCAGAAGACCAAgttgcaaaaaaacagcatcaggaTTCACaggaaactgatccagaaccagAGGCAGAAACAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAACCTCTAGGAGACCAATTGGTAAAAGAACAGGATCAGAATGCACAGAAAACTCCTCCCGAACTAGGAACAGAACCAGCTCAAACCACCCAGGAATCTGCTAAACCTAATGATCAACCTCCAGAAGACCAAgttgcaaaaaaacagcatcaggaTACACaggaaactgatccagaaccagGGGCAGAATCAGCTCCAACCACCCAGGAACCTTCTAAACCTAATGATCAAACTCTAGGAGATCAATCGGTAAATAAACAGGATCAGAATCCACAGAAAACTCCTCCTGCACCTGAGGGAGACCCAGATCCGAACATCCAGGAACCTGATAAAACTAATGATCAGCCTCTAGAAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGATCATCCAAAACCCTCCTAAAACTAATAATCAGCAACTAGGAGAtcaatctgtaaaaaaacaacatgaggATGCACTAGAAACTCCTCTCAAACCAGGGGCAGAACCATCTCTGACCACCCAGGAACCTGCTAAAGTTAATGATCAACCTCCAGAAGACcaatctgcaaaaaaacagcaacaggaTCCACAAGAAACTGATCACAAACCAGAGACAGAACCAGCTCAAACCACCCAGGAATCTGCTAAACCTAATGATCAACCTCTAGGAGACCAATTGGTAAAAGAACAGGATCAGGATGCACAGAAAACTCCTCCTGAACCAGGAACAGAACCAGCTCAAACCACCCAGGAATCTGCTAAACCTAATGATGAACGACTAGGAGAccaatctgtaaaaaaacagcatcaggaTACACAAGACACTGATCACAAACCAGAGGCAGAAACAGCTCTGATCATCCAAAACCCTCCTAAAACTAATAATCAGCAACTAGGAGAtcaatctgtaaaaaaacaacatgaggATGCACTAGAAACTCCTCTCAAACCAGGGGCAGAACAATCTCTGACCACCAGGAACCTGCTAAAACTAATGATCAACCTCCAGAAGACcaatctgcaaaaaaacagcaacaggaTCCACAAGAAACTGATCACAAACCAGAGGCAGAAACAGCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667504.1 True 6038 mRNA 0.44 5 600428 609429

Neighbor

gene id symbol gene type direction distance location
LOC103023152 NA coding upstream 42026 551043 ~ 558402 (+)
LOC103028849 NA coding upstream 76290 509572 ~ 524138 (+)
LOC107196798 NA coding upstream 106059 483139 ~ 494369 (+)
LOC107197531 NA coding upstream 132344 448393 ~ 468084 (+)
LOC111194470 mogat3 coding upstream 160864 430383 ~ 439564 (+)
cryab cryab,LOC108259721 coding downstream 828377 1437806 ~ 1442109 (+)
LOC103029064 LOC103029064,LOC108428730 coding downstream 848041 1457470 ~ 1469889 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 888279 1497708 ~ 1500545 (+)
alg9 alg9,LOC107691744 coding downstream 924600 1534029 ~ 1549757 (+)
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding downstream 950420 1559849 ~ 1579498 (+)
LOC111194483 NA non-coding upstream 2698 593655 ~ 597730 (+)
LOC111194487 NA non-coding upstream 6795 592228 ~ 593633 (+)
LOC111191745 NA non-coding upstream 12121 583710 ~ 588307 (+)
G15656 NA non-coding upstream 62141 464564 ~ 538287 (+)
G15660 NA non-coding upstream 106790 493270 ~ 493638 (+)
LOC111194479 NA non-coding downstream 3608 613037 ~ 615239 (+)
G15724 NA non-coding downstream 76644 686073 ~ 705802 (+)
G15748 NA non-coding downstream 800504 1409933 ~ 1412569 (+)
G15749 NA non-coding downstream 805753 1415182 ~ 1420808 (+)
G15771 NA non-coding downstream 844898 1454327 ~ 1457428 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 479247 70784 ~ 121181 (+)
LOC103025578 NA other downstream 713087 1322516 ~ 1340800 (+)
fdxacb1 fdxacb1 other downstream 907068 1516497 ~ 1529417 (+)
G15839 NA other downstream 1071730 1681159 ~ 1682022 (+)
nrgn NA other downstream 1541201 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 3906568 4515997 ~ 4517309 (+)

Expression


Co-expression Network