alg9 (alg9,LOC107691744)


Basic Information

Item Value
gene id alg9
gene name alg9,LOC107691744
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1534029 ~ 1549757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667524.1
CTTAGCTACTGAATAGTGGCGTTTTTTTACAGATAGTTAAACCAGCACATTCGCTTATATAAACCGGCGGATATTAAAAAGGTACGTGTCACATTAAATTATTCCCCCGCTGCCCCAAACAAACATGGCTGACCgcggtaaagcgaggcgacgctGCCCAACCGGCGCCATGACGGGCCAGCAGTAAACATGGCGACCAAGGGGGTCCGTCAGCGCAACAGACGGGGGAGCAAACAAGACCCCAACAACGTGAACAGTTCGACCAGCAGCGACACCAGAGCGGCCAAAGACGAGAAGACAGCTGACGACGGAAAGTCAGGCGATGCTCGGAGCGAGTACTCCGGTAAAGGAGGGCAGGTGTGGGCTCCGGAAGGCTCCACAGCCTTCAAGTGCCTGGTGTCAGCCCGCTTCTGCGCCGCCTTGCTCAGTAACATATCCGACTGCGATGAAACCTTCAATTACTGGGAGCCGACACATTATTTGCTTTATGGAAAAGGGATGCAGACATGGGAGTATTCACCAGCCTACGCCATTCGCTCTTATGCTTACCTGTGGCTTCATGCCCTTCCTGCTTGCTTTCATGCCAGAATACTGCAGACCAACAAGGTCCTTGTGTTTTACTTTCTCCGCTGTGTGTTAGCATTCACatgctgcgtctgtgagctctACTTTTACAAAGCAGTATGCAAGAAGTTTGGGCTGCATGTCGGACGCCTCATGCTTGCCTTCCTGGTCCTGAGTGCAGGGATGTTCTGCTCTTCTGCAgCTTTCCTGCCCAGCACCTTTTGCATGTACAGCACAGTAGTTGCTATGACCGGCTGGTTTCAAGGACGGCCCAGTCTGGCTGTACTGGGTGTGGCAGCAGGGGCCATTGTGGGCTGGCCCTTCAGTGCTCTGCTGGGAATACCCATTGCTTTTGACCTCCTCCTTTTGAAGAAGAAATGGAAAAGCTTTATCACGTGGACACTGGTGGCCCTGGCGCTCTTTCTGGTTCCTGTAGTTGTCGTGGACAGTTATTATTATGGGAAGCTGGTGGTTGCACCTcttaatataatattgtataacgTCTTTACTCCACATGGACCAGACCTCTATGGCACTGAGCCTTGGCACTACTATTTTGTGAACGGTTTCCTCAACTTTaatattgtgtttgtgttggcGTTGTTTTCGCTTCCTCTCACAGCTCTTATGGAAGCTCTGCTTCAGAGGTTTAATGTGCAGAACCTTGGCCGTCCTTACTGGTTAACTCTGTCCCCCATGTACCTGTGGATGCTGGTTTTCTTCACTCGTCCTCACAAGGAAGAGCGCTTCTTGTTTCCCATCTACCCCCTCATTTGTCTGTGTGGGGCTGTGGCACTCTCCTCTCTACAGAAGTGCTATCACTTCATGTTCCAGCGCTATCGTCTAGAGCACTACACCATCTCCTCCAACTGGCTGGCTCTGGGCTCCGTGCTTCTCTTCaccgtgctctctctctcacgctcagTAGCTCTTTTCAGAGGTTATCATGCTCCTCTGGACTTGTACCCTGAGTTTCACCGTATTGCCAAAGACCCGTCCATCCACACAGTGCCTGAGGGCAGGccggtcagtgtgtgtgtgttcaaTTGTTTTCACAGCTGGCAGCTGCAGTTCATCCAGTCTGAGTTCCGGGGGCAGCTGCCCAAGCCTTACGCTTCTGGACCTGACGCCACACAGCTCTTGCCCACAGACATGAATGACCAGAATTTGGAGGAGCCATCACGATATGTGGATCTGAAGCATTGCCACTATCTGGTGGACCTAGACACAGAAATAGAGGCTCCACGAGAGCCGCGGTACGCAGCTAACAAAGACGAGTGGAGCATCATTGCAGAAAAACCTTTCCTGGATGCTTCAAAATCGTCCAGGTTCTTCAGGGCATTCTTCGTTCCATTCCTGTCCGAGCACCACACTACCTACAGCCGATACGTCATCCTCAAGCCCAGGCGGGTGAAACACGGAAGGAGAAGAACGCAGCCCTGATGCTtcgtcttgttttcttttctttacccAGAATTGCatcctttctttgtttttcctgTTTCCAGATTTTTTCTGCACTAAGCCTCCAACAAGAACCTCCCATTGAACCCTGTGTGAGAATACTGTATTATGACTGTATTATGACTGAGTATGACTGTTTCCGGTTCCCACCCAAGCCACTTGTCGATTGCAGCATGGACGCTAAGGTCATTTGCCCATTACTGGCTATTCTCTCCCCATTTCTCTTTGCATTCCATTTCTATTTTCTGTCCCTCATTCAAGTGTTTCACAAATAGTGCATTACTACTGATGTAGGTCGCGCTCCAGCCTCTTTCTACCTTTATAACAGAAGATGATCTGTTGAGCAACCCCTTTAAGGACCACAAGTCCCTTCTTCGTCAATGTCCCGTGAATACGTCTTCATGCTCTCTTGATctgggtttggacaatgaactCTACCTAGCTCCAGGTCACTGTTAACCTATTGTCTTACGGTCTTGCAGTGTGTGGAGTATACATGCATTTGCGATTGCtcgtcttgtgtgtgtgtgtgtgtgtgtggtccagGTCCTGCCCTGTTGCAGCTTCTTGGGTAGGAGAAGTgactgtttctctttctgtgaAAATGCAACATCAGGTTGCGAGATGGGTGGTGGACCAGGGCATGTTACTGGTCAATGTGCATTTGttctcaaaacaaaaaaaaaacatctcagtgtTAACTGTTTGATGGAATGGAATAAAGAGTGTCTTGATGAGTGTTGGCCGA

Function

symbol description
alg9 Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in central nervous system; epiphysis; polster; and retina. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Il. Orthologous to human ALG9 (ALG9 alpha-1,2-mannosyltransferase).

NR:

description
PREDICTED: alpha-1,2-mannosyltransferase ALG9 isoform X1

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03846 ALG9; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667524.1 True 2776 mRNA 0.50 16 1534029 1549757

Neighbor

gene id symbol gene type direction distance location
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 33484 1497708 ~ 1500545 (+)
LOC103029064 LOC103029064,LOC108428730 coding upstream 64140 1457470 ~ 1469889 (+)
cryab cryab,LOC108259721 coding upstream 91920 1437806 ~ 1442109 (+)
LOC111191737 NA coding upstream 924600 600428 ~ 609429 (+)
LOC103023152 NA coding upstream 975627 551043 ~ 558402 (+)
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding downstream 10092 1559849 ~ 1579498 (+)
btg4 btg4 coding downstream 114839 1664596 ~ 1669346 (+)
LOC103036563 hepacam coding downstream 637629 2187386 ~ 2203190 (+)
ccdc15 ccdc15 coding downstream 659888 2209645 ~ 2220704 (+)
slc37a2 slc37a2,LOC107691751 coding downstream 674279 2224036 ~ 2240887 (+)
G15771 NA non-coding upstream 76601 1454327 ~ 1457428 (+)
G15749 NA non-coding upstream 113221 1415182 ~ 1420808 (+)
G15748 NA non-coding upstream 121460 1409933 ~ 1412569 (+)
G15724 NA non-coding upstream 828227 686073 ~ 705802 (+)
LOC111194479 NA non-coding upstream 918790 613037 ~ 615239 (+)
G15813 NA non-coding downstream 31756 1581513 ~ 1581946 (+)
G15818 NA non-coding downstream 37021 1586778 ~ 1636251 (+)
G15831 NA non-coding downstream 74169 1623926 ~ 1624377 (+)
G15845 NA non-coding downstream 180073 1729830 ~ 1730349 (+)
G15890 NA non-coding downstream 279027 1828784 ~ 1829016 (+)
fdxacb1 fdxacb1 other upstream 4612 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 193229 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1412848 70784 ~ 121181 (+)
G15839 NA other downstream 131402 1681159 ~ 1682022 (+)
nrgn NA other downstream 600873 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 2966240 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4619003 6168760 ~ 6177884 (+)
G16820 NA other downstream 4982639 6532396 ~ 6532868 (+)

Expression


Co-expression Network