LOC103035296 (LOC108432792)


Basic Information

Item Value
gene id LOC103035296
gene name LOC108432792
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39699292 ~ 39700706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667875.1
aaGACTAATATGAACATGCATGCTCTGGATTAATGATATTATATGTTAAAGTGAATTTGTGTTTGATAAATGTGTGACCAttcaactttttatttatgtgttttagaATAGGAaggcagtgtgtgtgctgtacaTGGACACCATAATCAACTTTAACCAAAGCGGAACCTTGGAGAAACCTCCACTTTGTTTCGATTCTCTTAATGGCTCTTGTCTGAAAGTGAATTATCCTCTTGAAATTCGTGTTGTGCTCTATATCTTCTTTAGTGCATCATCTCTTCTAACAGTGATCGGAAACCTGCTGGTGATCATAACAGTTATTCACTTCAAGCAGCTGCACACACCAACTAACTACCTCATTGTCTCTCTGGCTGTAGCTGATCTGCTTGTAGGAGGGGTGGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTACTTGGGAAGCATATTCTGTAAAATACACAGCAGTCTTGATGTCACGGTTTGCACTGCGTCTATTCTTAACCTGTGTATAATTTCTTTAGATCGATATTACGCTGTGTGTCACCCTCTTCTCTACCACAGTAAAATGACTCCCAATACCACTGTGTTTATGATCTTCGTTTGCTGGACCATATCTGTATTAGTGGGATTTGGGATGATATTTCTGGAGCTCAATATTCTGGGCAATGAGGACTTTTACTACAACAACTTTGTTTGTGAGGGTTCCTGTACAGTGTTTCAAGCCAAGGTGGGAGCTCTTGTGTTTTCAATGCTTTGCTTTTACATTCCAGCCCTAGTGATGCTCAGTGTGTACGTGAAAATACTGCACACTGCACGAAGACAAGCACGAGCAATCCACAGTACCAACACTcatattaaaaacacagcagaggAAAAAGCCAACATAAACAAGTCGGAAAGAAAGGCCACCAAAACGTTAGCCattatcatgggtgtgtttctATCATTCTGGGTCCCATTTTTCCTTTGTAATTGCATAGATCCGTTCACCGGATACTCAGTGCCACCACTTCTGTTCGACCTGTTCTTATGGGTGGGGTATTTCAATTCAACATGTAATCCTATAGTGTATGCCTTTTTCTACAGCTGGTTCAGACATGCTTTTAAAGTCATTCTCTCTGGCGGAATATTCCAGACCAATTCATCACGGACCAAactgttttaaagttaaactCACTTCTGTATCCCTGTGACTGTCCATGTACTGTAACCATACTAAAAAAAGCACCTGTAATAATACCTATATTTAGCCATATATCTTATATTATGTGGACAATCTAAGCTGGTTTGCAATTTCAGACAATCCTGATTAGACAATCAGGATTTCAGTAAGATGATTAAGACTTTTTTTGTGAATCATGCTTACATTAAATGAAATCTGAATAAATTCCCTTAGCTTTAAA

Function

NR:

description
PREDICTED: trace amine-associated receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667875.1 True 1415 mRNA 0.39 1 39699292 39700706

Neighbor

gene id symbol gene type direction distance location
LOC103036931 LOC103036931,LOC108432867,LOC108274078 coding downstream 6110 39691978 ~ 39693182 (-)
LOC103032818 NA coding downstream 32213 39665304 ~ 39667079 (-)
LOC103037563 LOC108432817 coding downstream 36976 39659836 ~ 39662316 (-)
LOC103037243 LOC108432794 coding downstream 41846 39656134 ~ 39657446 (-)
stx7 stx7 coding downstream 46231 39640238 ~ 39653061 (-)
LOC103035599 LOC103035599 coding upstream 3422 39704128 ~ 39705844 (-)
LOC111194344 NA coding upstream 17983 39718689 ~ 39720722 (-)
LOC111191820 NA coding upstream 26808 39727514 ~ 39728585 (-)
LOC111191823 NA coding upstream 33141 39733847 ~ 39734968 (-)
LOC103035909 NA coding upstream 49316 39750022 ~ 39751990 (-)
LOC111196215 NA non-coding downstream 175018 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 199826 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 218948 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 490027 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 511014 39187782 ~ 39188278 (-)
G24964 NA non-coding upstream 23749 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 118570 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 144667 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 682895 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 1025093 40725799 ~ 40726362 (-)
G24903 NA other downstream 241103 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 352376 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 374590 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 772299 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 776375 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 474556 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1513715 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1735335 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2155389 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2168318 41869024 ~ 41880424 (-)

Expression


Co-expression Network