LOC111191907 (opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142)


Basic Information

Item Value
gene id LOC111191907
gene name opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44673130 ~ 44693172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668053.1
GTGCTCTGCTGAACATCCGCATTCAAGGAGGACCGGATTACAGATTCTGCAGAGGTGGGGAAACGAATTACTCCACAGGATGTCATGATGACAGCGACGAGACGATGCAAATTAGGAGAGTGCTGCAAAGGAGATAGAGCCGCAGCTGGAATTTTCAGAAAAATGTTGCCAGCTCACTCTGATTGATGAGCAGAAATGGATGAGCAGTACATTTCTAAATTAACCCCTGCTGTTGACTATGGAGCTGGTATCTTCCTGCTGGTGGTAGCCATTCTTTCCATCCTGGGGAACGCTGCCGTCCTGATCACGTCTGCTCGACGACACAGACTTTTAAAAGCCCCGGAGCTGCTCACTGTCAATCTGGCCGTGACTGATATCGGCATGGCACTGAGCATGTATCCACTCTCCATCGCCTCAGCCTTCAACCATGCCTGGATCGGAGGTGATTCCTCCTGCCTGTACTACGGGCTGATGGGAATGATCTTCAGCGTGGCCAGTATTGTGACACTGGCTGTCATGGCCATGGTGAGATACCTGGTGACAGGAAACACTCGCAAATCAGgaaACAAGTTCCAAAAGCAGACGATAAGCATCTTCATCGCACTTATCTGGCTGTATTCACTGCTGTGGGCAGTGTTTCCCCTGCTGGGTTGGGGGGGATATGGACCAGAACCATTTGGCTTGGCCTGCTCTGTGGACTGGGCTGGCTACCAGCACTCACTGAATGGATCTACATTCATTATGGCTCTGGCAATATTGTGCACCATCATCCCATGCGGCGTCATCTTATTCTCCTATTCTGGCATTGCTTGGAAGCTCCACAAGGTCTACCAGACCATCCAGAGCCACGACATGCTGCCCAACTCAGGTTATGTGGAGAGGAAAGTCACACTGATGGCCATTCTTATCAGCTCCGGCTTCATCGTCTCCTGGACTCCCTATGTGGCTATCAGCCTCTGGACCATGTTTCACTCTGAGGGGAAGGACAGCGTAGCACCTGTCGTCAGCATGCTGCCCTGCCTGTTTGCCAAGTGCTCCACAGCCTACAACCCCTTCGTCTACTACATCTTCCGCAAGTCTTTCCGTCAGGAGCTGAAGCGGCTGCGGAGCTACTGCTGGTGCCACCACCCAGAGGATGAGTTACCCGCTGCAGAGGAAGACCACAACCAGTGGAAGATCTCAGTGATCCTGAAAAGTCCTGGAGAACAAAGACATCAATGCATTACTTCGGGGGGCTGCTAGACCACTCTAAAAACAAGCATTCATGATGACAAGGTGACTAGTTTAAGCTAGCGACAGACATGTCTCCACAGACTGCAGCCTGATGAGCAGTGTTGATTGACTCTGCACTATTGGTGTGTGGTTTATTGGCATGTATTGTTTGAAAGAACAAATGGTCTGTGAAAGGGCTGCTTACTGACCTGAAACTGTGTATAAGCAGCAGGCACTTAGAACTCCTAATGAAGCCTTGTTTACACATCAGAGCTGTGCAGAAACATCTGGGTAGCACTGAATCGTGTTCTGattatataaaccaaaaatagaTGGTGAAATAGAATCAAATgctgtaccgtatttttcgcactataagggacaccagattataaggtgcactatcaataaacgtctattttctggtcttttttcattaataagGCGCACCGCATTATGTGAAACTAGTTAGGAACAGGGGTgatgccatgtttcccttttaattcagcaggtcttgcaaCTGGGTGGctagacctgtaaag

Function

symbol description
opn8a Predicted to enable G protein-coupled receptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

NR:

description
PREDICTED: opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668053.1 True 1754 mRNA 0.49 4 44673130 44693172

Neighbor

gene id symbol gene type direction distance location
LOC103046392 LOC103046392,LOC108414880 coding upstream 193226 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 201199 44460685 ~ 44471931 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding upstream 212871 44417438 ~ 44460259 (+)
LOC103042260 NA coding upstream 313727 44357276 ~ 44359403 (+)
LOC103041645 mcm3,LOC107732373,LOC107698330 coding upstream 325474 44339246 ~ 44347656 (+)
LOC111197225 LOC108410507 coding downstream 17201 44710373 ~ 44727205 (+)
wdcp wdcp,LOC107600078 coding downstream 110387 44803559 ~ 44808849 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 179292 44872464 ~ 44960236 (+)
LOC103023922 NA coding downstream 740747 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 802509 45495681 ~ 45501646 (+)
G26124 NA non-coding upstream 295603 44377325 ~ 44377527 (+)
G26121 NA non-coding upstream 305199 44364592 ~ 44367931 (+)
G26107 LOC108439850 non-coding upstream 349308 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 400626 44272294 ~ 44272504 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding upstream 409928 44256473 ~ 44263202 (+)
G26216 NA non-coding downstream 42662 44735834 ~ 44736653 (+)
G26217 NA non-coding downstream 43995 44737167 ~ 44738115 (+)
G26225 NA non-coding downstream 74985 44768157 ~ 44768487 (+)
G26226 NA non-coding downstream 76090 44769262 ~ 44770002 (+)
G26235 NA non-coding downstream 106812 44799984 ~ 44800646 (+)
LOC103033920 LOC108416105 other upstream 1178814 43490323 ~ 43494316 (+)
G25880 NA other upstream 1248224 43424392 ~ 43424906 (+)
G25879 NA other upstream 1251084 43421771 ~ 43422046 (+)
rps29 NA other upstream 1309686 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1411031 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1835196 46528368 ~ 46549553 (+)
G26915 NA other downstream 3585095 48278267 ~ 48315894 (+)
G26995 NA other downstream 3862625 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3885631 48578803 ~ 48618075 (+)
G27075 NA other downstream 4048042 48741214 ~ 48742439 (+)

Expression


Co-expression Network