LOC103030371


Basic Information

Item Value
gene id LOC103030371
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46132573 ~ 46134116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668060.1
GAGGTAAAATAACTAACTGCACTGCATCATAGTGTGAACAGAGTATAGCTTCACAGTGACTGAAGTTCGTCATTTTGCCAACCAGATtgatggagagttttatctttGGGCTGTTGGTGCTGAGGATCATGCTTTCTGTCATTGGTGTATTGGGAAATACTGTCTTGATTGTATCAATCCTCCAGATGACTCGACTGAAGACATTTGAAGTGTTTCTGCTTGGACTAGCTGTGTCAAATCTTGAGGAGATTATGATTGTGGACATCTACGACATGATTGTTCTTCGCTCTACCCACAGCATCAGCATTTTGTCCTGCGGTGTACTGAAGTTCATGACCTTGTCTGGAGAAGTTGCCAGCATCTTTTTCACGGTGCTTATCAGCATTTACCGCTATCAGAAACTGCACAATGCTGCCATGCGGATAATCACACCAATCTTTATGGACAGCATGAAGATAGGGGTCGGCCTTAGTCTGTTGTGTGTTCTGGTAGCTGTTCTCGCTAGTGTGCCAACTTACATCATAAACCTGGATAGCTGGCATCACATGTACAATTCCACTATTTCAGACTGCCCAGCTGATTTTTTCCAGTGTCCAAGAGACAACTGTCCCATTCTCAACAATATTTACAGgttcctttttattttcttctgttaccTTATACCGCTTGTCATTGTGACAGGGACAAGTTCTCTAATTATCAGGATTTTGATGATTCAGCAAAAGGTGGCAGAATTACACCACAATTCAGAACCAGCTACCATTGCTGCAAACAAtgatcatcaccatcatcatcataatcatcatcatcatcatcatgatcatcatcatcatcatgatcatcatcaccatcatcatgatcatcatcatcatcatgaccACACCAATGTGTTTCATCGGAGCAcaattggcatattggctgcaATGATGATATTCCAGGTATACTGCATTTTATATCTCGCTCGTCACCTGGCGTTTAATCTGTATGACTTTCCTGCTTGGTCAGAACTGGAATTCTTCATTGCAACATTCTATACAGCTTTAATCCCCTATGTCTATGGGATGGGACATAACTTTTTCTCCCTAAAACATTTCAGGAGGCAATAGctagtttaaaaatgtgtttttcttcacagCTTACAAAATCCTTCATTATGACACTGTTATATAGAAACAATTAAGCCCATACATTAAgaatattattaagtattgcatGGTTAGACCTGTTACTTGTGTTGTTTTCTTCTacttttattagaaaaacaACCATATCCAGCTGAGTGTAGAATCAATATGAAAATCAAGCCATTTTGTGAATTAGAAATGTTTGTAATTTAGTTGAATCACTGAACACATAACTTATTCAAATAACTTAGAAGCTAACAGTTTCTGTGTACAACCACTTCACATAACACTTTTAATATTCCTTTGTTTTTAATTGTACATAGTTTAATTTGTCACACTTTTGTGCTATGTTATACACACATTAAGCATAACAGgcattataaaataaagtttgtaaTTATCTTCAGCATCATTCTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668060.1 True 1544 mRNA 0.38 1 46132573 46134116

Neighbor

gene id symbol gene type direction distance location
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding upstream 55589 46069573 ~ 46076984 (+)
lamp5 lamp5,zgc:165600 coding upstream 186741 45934474 ~ 45945832 (+)
plcb4 plcb4,LOC108258041 coding upstream 206472 45802754 ~ 45926101 (+)
LOC103021983 plcb1,LOC108258091 coding upstream 347119 45615562 ~ 45785454 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding upstream 562089 45560546 ~ 45570484 (+)
LOC103027027 LOC108444466 coding downstream 26535 46160651 ~ 46178257 (+)
LOC103027954 NA coding downstream 58913 46193029 ~ 46201498 (+)
LOC103028674 LOC108411639,LOC102297057 coding downstream 100563 46234679 ~ 46289280 (+)
LOC103029419 LOC108411685,LOC108258103,LOC101066055 coding downstream 157892 46292008 ~ 46300124 (+)
entpd5 LOC103043327 coding downstream 207741 46341857 ~ 46352200 (+)
G26477 NA non-coding upstream 49170 46080305 ~ 46083403 (+)
G26476 NA non-coding upstream 65386 46066888 ~ 46067187 (+)
G26390 NA non-coding upstream 593634 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 603988 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 1019605 45111185 ~ 45112968 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 221769 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 229768 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 276315 46410431 ~ 46410875 (+)
G26679 NA non-coding downstream 346075 46480191 ~ 46480391 (+)
G26687 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 non-coding downstream 377169 46511285 ~ 46514839 (+)
LOC103033920 LOC108416105 other upstream 2638257 43490323 ~ 43494316 (+)
G25880 NA other upstream 2707667 43424392 ~ 43424906 (+)
G25879 NA other upstream 2710527 43421771 ~ 43422046 (+)
rps29 NA other upstream 2769129 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2870474 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 394252 46528368 ~ 46549553 (+)
G26915 NA other downstream 2144151 48278267 ~ 48315894 (+)
G26995 NA other downstream 2421681 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2444687 48578803 ~ 48618075 (+)
G27075 NA other downstream 2607098 48741214 ~ 48742439 (+)

Expression


Co-expression Network