LOC103041285 (LOC108413330)


Basic Information

Item Value
gene id LOC103041285
gene name LOC108413330
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52640295 ~ 52641584 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668102.1
ATGGAGCTGAACCTGTCTGAGTCCTTGGTCCCTGTTGTGGACTCAGGCAACTGCACCTATACAGAAGCCTGGGAATGGCTGAGCAGTCTCCAGCCCACGTTCCTAGCGCTCATCAGCATCACCGGAGTGGTGGGTAATGGCCTGGTTCTCTGCGTCTTCTGCCTGCAGAGGAAGCCCTGCTCTGTAGCTGACATCTACCTGGGCAACCTGGCGTTTGCCGACCTGGTCATGGTGGCTTGCTTGCCTTTCTGGGCAGTCACTATTGCTCGGGACTACCAGTGGAACTTTGGCGAGCTGCTCTGCAAGTTGGTCAACACCGCTATTGCCATGAACTACTTCTGCAGTGTTCTGTTTCTGGTCCTGGTTAGCGTGGATCGCTATTTAGCCTTAGCCAGACCCATGAACCCCAGCCGACTGAGACGCTCATCCTGGGCCAAGCGAATGTGCGTGGGCATCTGGGCAGTGGGCATGCTGCTTAGTATCCCATCTTTTCTCTTCCGAACTGTCAGTTACTTTCACGAAGCCGGGGTGCACGCCTGCTTCCTGGTTTTCCCACACCCAAGCTGGAGAATCCAAAGGAACCTGACCAGGATTGTGCTTGGGTTTGTTATTCCCCTGCCGATCATAGCATTCTGCACCCACCACATGGTAAAGGCTCTAAAAGATGGCAGTGCAGTGGCACTTCCTGGTGTCAAGATGGAAAGGAGGGCTACTCATCTTGTGCTGACAGTGCTGGCTGTCTTCCTCTTCTGCTGGACACCTTACCAGGTGGTGCGCTTCTTGGACACTCTAGAGTATTATCAGATCACATCTGGGTGCTTCTACGGCCACATCTTAGACATTAGCTTGCAGGTGACCACCTACTTGGCCTACGCCAATAGTGCGATCAACCCTTACCTCTATGTGGTCGTTGGAAAACACTTCAGGAGAAGAGCTAAAGGCGTGTTTAGGAAACTCCTTAACCCTGTTTGGAAGGACAGCAACATGAACATCACTTACGGCAGCAAGTGGAGCGAGAGCCGCAAAGACTCGTGTATACTTGAAAAGCGAATTGTGCCAGTGTGCATAACATCTGTTGGAGTGCAGTTATGTAGCTAAAAAAGAAGCTGTCCAGAAAGTGAGCCTCAAATGATCCTAATGTTTACAGAATTTCctcattaataaaacatgttgACAGATTTAACATGATGTTAAAAGCAGGTATCATTGGAGTCACCTACTATCAGGGAACCCAATGAAAACTTAACATTAGCACTGAATATTAAGTATTAAATAAGCACGACCTTTATT

Function

NR:

description
PREDICTED: B2 bradykinin receptor-like

GO:

id name namespace
GO:0003008 system process biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668102.1 True 1290 mRNA 0.49 1 52640295 52641584

Neighbor

gene id symbol gene type direction distance location
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 86023 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 149408 52484734 ~ 52490887 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding downstream 184148 52451303 ~ 52456147 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding downstream 194488 52438457 ~ 52445807 (-)
cgrrf1 NA coding downstream 257346 52374516 ~ 52382949 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding upstream 28527 52670111 ~ 52717067 (-)
glrx5 glrx5,LOC106571612 coding upstream 118469 52760053 ~ 52765844 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding upstream 692381 53333965 ~ 53410069 (-)
med23 med23 coding upstream 1047783 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 1521518 54163102 ~ 54190321 (-)
G27755 NA non-coding downstream 160757 52479262 ~ 52479538 (-)
G27738 NA non-coding downstream 239099 52365841 ~ 52401196 (-)
G27690 NA non-coding downstream 331528 52308348 ~ 52308767 (-)
G27689 NA non-coding downstream 336318 52303601 ~ 52303977 (-)
G27660 NA non-coding downstream 457079 52181616 ~ 52183216 (-)
G27798 NA non-coding upstream 79077 52720661 ~ 52779893 (-)
G27808 NA non-coding upstream 140441 52782025 ~ 52782480 (-)
G27822 NA non-coding upstream 155981 52797565 ~ 52816766 (-)
G27836 NA non-coding upstream 263193 52904777 ~ 52905476 (-)
LOC111188804 NA non-coding upstream 296824 52938408 ~ 52942055 (-)
LOC103040973 NA other downstream 318375 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 1899861 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2100623 50522899 ~ 50539672 (-)
G27400 NA other downstream 2108656 50481889 ~ 50531639 (-)
G27258 NA other downstream 3000851 49638759 ~ 49639444 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 144888 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 980487 53622071 ~ 53622358 (-)
akap7 NA other upstream 1101296 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1408211 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1915304 54556888 ~ 54623840 (-)

Expression


Co-expression Network