LOC111191939


Basic Information

Item Value
gene id LOC111191939
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62213160 ~ 62214666 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668148.1
ctagctagcttgctagcctGGTGGTCACCATGGTTACTGCAGAAAAGATTCCACCGACATCACAGGTGTGACATCACACACCTGAGCGTATATGAGCAGGAGTTCTGTCAGTTGGGGTTCAGGCTAGAGCTGGGAGACGCAGTATCAGGACTTCGGAGGAAATCTTGCAGTTACTGAGGACGAGCAGCTTTGGCAATATGTCTTTACTGAACTCGGTAAAGACGGCGGTTCAGCGGCCGGTGAAGATAAACCGGCAGAGCTGGGAGAACTTCCAGCACGGGAAGACCAACCGCCCCAGCAGGAGTGAGACACGTCCCCACGTGTTAATGGACGGACATTTGGACGCTCCTGCACTGAAACAGGCCAGACTCCAGCTGGAGAGAGATACTGTCGTTCACACCAGCGGAACCTCTcgtaagaggaagctggaggAGACACCGGAGGATAAAGCTCCAGTGATGAAGAAGGCTCAAATCCAGCTGGAGAGAGCTCTTCCCACAGTATGGATTATAGGCGACAGCTATGTTCGCCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGCAGGCTGAGATCAGCTGGTTCGGCTGGGGAGGACTAAGGTGGCGAGGACTTGTTCCGTTCTTTAACCAATCTCTACAAGGAAGAACGGCTCCGGACGTGCTCGTCATCCACTGTGGCGGCAATGACCTTGGAGGGATGGGCGCCGTCCATCTCAGTGCAGAGATGAAGTTGGATCTGCTTGATCTCCATCGTCGTTTCCCACACATAAAGATCATGCTGTCAGATATCACCCCAAGACGCCAGTGGAGGTCCACCATGCACCCCAAGCGGATCGATGCGGCCCGGAAATGGGTAAACCGCGAGATGGCTGATTTCGTCTTGGGAGTGGAGGGGGGTGTTATTCATCACCCAGATATCATGTTCCACAACCCTGGGCTCTTCCTCAGAGACCAGGTCCACCTGTCTCCTTCAGGCAATCAGCTGTTTTTGAATGACATTGCAGAATCCCTGAAAACCTTCATATAATAAAGGTGATTCTGCTGAAATCA
>XM_022668152.1
TATTAGTGGcactagctagcttgctagcctGGTGGTCACCATGGTTACTGCAGAAAAGATTCCACCGACATCACAGGTGTGACATCACACACCTGAGCGTATATGAGCAGGAGTTCTGTCAGTTGGGGTTCAGGCTAGAGCTGGGAGACGCAGTATCAGGACTTCGGAGGAAATCTTGCAGTTACTGAGGACGAGCAGCTTTGGCAATATGTCTTTACTGAACTCGGTAAAGACGGCGGTTCAGCGGCCGGTGAAGATAAACCGGCAGAGCTGGGAGAACTTCCAGCACGGGAAGACCAACCGCCCCAGCAGGAGTGAGACACGTCCCCACGTGTTAATGGACGGACATTTGGACGCTCCTGCACTGAAACAGGCCAGACTCCAGCTGGAGAGAGCTCTTCCCACAGTATGGATTATAGGCGACAGCTATGTTCGCCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGCAGGCTGAGATCAGCTGGTTCGGCTGGGGAGGACTAAGGTGGCGAGGACTTGTTCCGTTCTTTAACCAATCTCTACAAGGAAGAACGGCTCCGGACGTGCTCGTCATCCACTGTGGCGGCAATGACCTTGGAGGGATGGGCGCCGTCCATCTCAGTGCAGAGATGAAGTTGGATCTGCTTGATCTCCATCGTCGTTTCCCACACATAAAGATCATGCTGTCAGATATCACCCCAAGACGCCAGTGGAGGTCCACCATGCACCCCAAGCGGATCGATGCGGCCCGGAAATGGGTAAACCGCGAGATGGCTGATTTCGTCTTGGGAGTGGAGGGGGGTGTTATTCATCACCCAGATATCATGTTCCACAACCCTGGGCTCTTCCTCAGAGACCAGGTCCACCTGTCTCCTTCAGGCAATCAGCTGTTTTTGAATGACATTGCAGAATCCCTGAAAACCTTCATATAATAAAGGTGATTCTGCTGAAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668148.1 True 1066 mRNA 0.53 3 62213160 62214655
XM_022668152.1 False 972 mRNA 0.53 2 62213160 62214666

Neighbor

gene id symbol gene type direction distance location
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding downstream 155297 62046691 ~ 62057863 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding downstream 173321 62009807 ~ 62039839 (-)
LOC103031530 NA coding downstream 204534 61996353 ~ 62008626 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 397574 61707691 ~ 61815586 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding downstream 782881 61369995 ~ 61430279 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 86481 62301147 ~ 62362260 (-)
LOC103034091 NA coding upstream 583953 62798619 ~ 62817748 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding upstream 728407 62943073 ~ 62962918 (-)
LOC103046711 LOC108414824 coding upstream 764646 62979312 ~ 63007981 (-)
trappc8 trappc8 coding upstream 799572 63014238 ~ 63065232 (-)
G30066 NA non-coding downstream 34727 62178192 ~ 62178433 (-)
G30058 NA non-coding downstream 102691 62110268 ~ 62110469 (-)
G30047 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 non-coding downstream 222500 61984674 ~ 61990660 (-)
G30021 LOC108414863 non-coding downstream 229609 61979563 ~ 61983551 (-)
G30014 NA non-coding downstream 233698 61950417 ~ 61979462 (-)
G30083 NA non-coding upstream 18262 62232928 ~ 62236594 (-)
G30081 NA non-coding upstream 19152 62233818 ~ 62235787 (-)
G30093 NA non-coding upstream 45456 62260122 ~ 62260326 (-)
G30150 NA non-coding upstream 503627 62718293 ~ 62751535 (-)
G30141 NA non-coding upstream 522541 62737207 ~ 62744288 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 322431 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 848282 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1843546 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1848416 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2051094 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 922285 63136951 ~ 63288108 (-)
G30376 NA other upstream 1115378 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1219126 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1313615 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2560018 64774684 ~ 64799176 (-)

Expression


Co-expression Network