LOC111191956


Basic Information

Item Value
gene id LOC111191956
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72206947 ~ 72208136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668194.1
AAGTttttgcctcgttattccacgcgcAAGCATCAGTGCTCCGGCGCATCCGCGacagtttttttcccagcatttaattttttactcagtaacggggagttttccaatgtatcgaagtaaattacttgtgtcaaagtCTACTTGAGTAAaggtaaaatgacctattttaaaaactacaaattaCTCGTAAAGTCTAATCAATTACAGTAAGGTGAATAAATGTAATTCGTTACGTTCCACCCCGGAGCAGAAGGAGTCATGGCGAAAGACCAGTACACCAGAGACCTGGAGAAGCTGATCATGGAGCAGAGAGACACAACGTCCAGAGTGCTCAAACAGTGGACAATCGAGAAGGCTGAATGGGACGCGGAGAAAAAGAAGATGAAGCTGGAAATCGAAGAGCTGAAGAAGGAAGGAGAGAGGCTCACCctgagaaagaagaaagaggaagagcagatgcactctaaaaatgtgggagATGTGAAGGATCTCCTAGAAATGAAACAGGTGCAACAAGCAATGGAACGCCTTCAGAAGtcagagaaggaaaaaagagatCGAATCCTGCAGGCCTGGACTGTGGCAAGTAAGGAAtgggaggaggagaaaaagaagatGAAGCTGGAAATGGAACAGCTGaagaagaaagacaaagagcaGACGGGAGATGTGAAGGATCTCCTAAAAATGACAGTAGTGCAGAAAGCAGTGGATCTCATTCAGAAGTCAGAGACTCAAAGAATTGATAGGATCCTGCTGGCCTGGACTAAAGCAAGTGATGAAtggaaggagaaagaaaagaagatgaaGCTGGAAATTGAACAGCTGATGGAAGAAGGAGAGAAGCTGAAAGCGATGAAGCAGAAAGACGAAGAGCAGACGGTAGAGGTGAAGAAGGATCTCCTAGAAATGAGAGTGGTCCAGAAAGCAGTGGATCTGATTCAGAAGTCTGAGactgaaaaaagagacagaatcCTGCAGGCCTGGACTGAAGCAAGTGATGAATGGAAGGAAAAGATGGAGATGGTgatgaaataaagagagaaggagaagaaggagatgGAAAAGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668194.1 True 1072 mRNA 0.44 2 72206947 72208136

Neighbor

gene id symbol gene type direction distance location
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding upstream 122702 72036206 ~ 72084245 (+)
LOC107197929 NA coding upstream 209306 71988157 ~ 71997641 (+)
LOC111191308 LOC108415780 coding upstream 505653 71698448 ~ 71701294 (+)
oma1 LOC107581495 coding upstream 867647 71316242 ~ 71339300 (+)
mysm1 mysm1 coding upstream 892471 71302470 ~ 71314476 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 351221 72559357 ~ 72567455 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding downstream 396077 72604213 ~ 72610182 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding downstream 419104 72627240 ~ 72636248 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding downstream 446683 72654819 ~ 72679083 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding downstream 534882 72743018 ~ 72777057 (+)
G32539 NA non-coding upstream 56156 72150568 ~ 72150791 (+)
G32535 NA non-coding upstream 57471 72149275 ~ 72149476 (+)
LOC111191996 NA non-coding upstream 744070 71457906 ~ 71462877 (+)
G32379 NA non-coding upstream 915088 71261305 ~ 71291859 (+)
G32219 NA non-coding upstream 1074906 71129690 ~ 71132041 (+)
G32556 NA non-coding downstream 34349 72242485 ~ 72242811 (+)
G32570 NA non-coding downstream 114525 72322661 ~ 72323006 (+)
G32579 NA non-coding downstream 154815 72362951 ~ 72363341 (+)
G32630 NA non-coding downstream 356873 72565009 ~ 72595678 (+)
G32644 NA non-coding downstream 418260 72626396 ~ 72626685 (+)
dab1 dab1,LOC107581465 other upstream 226584 71463100 ~ 71980363 (+)
G32229 NA other upstream 1037391 71167524 ~ 71169556 (+)
G32225 NA other upstream 1065763 71137512 ~ 71141184 (+)
G32198 NA other upstream 1131061 71073848 ~ 71075886 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other upstream 1339304 70856811 ~ 70867643 (+)
usp24 usp24 other downstream 195398 72403534 ~ 72497064 (+)
G32641 NA other downstream 387770 72595906 ~ 72596937 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 573657 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 936514 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 1230920 73439056 ~ 73506987 (+)

Expression


Co-expression Network