LOC111191981


Basic Information

Item Value
gene id LOC111191981
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8904081 ~ 8921731 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668284.1
CTCCATCCAGTTTAACGAGTGAATCTACATTTACAGGAGTGATGAACACTGTATCCACTGTTACCAGTAACACCActCCCATCCAGTGTCAACAGTAAGTCTACATTTACAGGAGTGAAGAGCAGTGGATCCACTGTTACCAGTGACATCAATACATCCAGTGTCAACACTTCGTCTGCACCGAAAGAAGTGGAAACTACTGGATCTGCTCTTACTAGTAAGACCActttaTCCAGTATGTTAACAGGAGTGAAGAGCAGTGGTTCCACTGTTACCAGTAACACAAcTACATCCAGTGTCAAAACTGTATCTGCACTGAAAGGAGTGGAAAGCACTGGATCCACTGTTACTAGTAAGACCACATCATCCAGTATCAACAGTGTGTTGACATTTACAGGAGTGAAGAGCACTGGATCCACTATTACCAGTAACACCActTTATCCAGTATCAACAGTGTGTTTCCAGGAGTGAAGAGCAGTGGATCCACTGTTACCAGTAACACCACTTCATCCAGTGTCAACAATGTATCGACATTTACAGGAGTGAAGAGCAGTGGATCCACTGTGACCAGTAACACCACTACATCCAGTGTCAACAATGTGTCAACATTTACAGGAGTAAAGAGCAGTGTTACcagtaacaccaCTACATCCAGTGTCAACAGTGTGTCGGCACTGAAAGGAGTGGAAAGCACTGAATCCACTGTTACTAGAAGGATGAGCAGTGGATCCAATGTTACCAGTAACGCCAACGATGAAGCAGGAGTGAATCAGACCATCACTTCATCCAATGTATACAGTGCGTTTGTAAGAAGTCGCACTGAGACTGGGTTAATATTACAATGGAACAAAGTGAACAACAGCAGCAGTTACAGTTACAGACTGAACTACAATGGAATAAACATTAATATCAATGGATCAGAGGGAGGATCTGTAGTGATAATCATCTCATCTCTTTCTTCCGGAAATAAATACACCTTCACATTCTACACTGTATTTGAAGGAGTGGAGAGCAGTGGATTTAACTTTACCAGTGTCACCAtTCCAGCTACTGTAACTGGTCTGGGCTGTAAGTCTGCATCTGGAGGATATGGTCTAACTGTGTTTTGGGATCCTCCTGTTGGGGAGAGGACAGGTGTGAAGGTTGATGGAAATGGACAGAGTTTAAATGCGAGTGGAGAAAGTCTGTCTATAGGGGGACTACAACCTGCACAGTGGTACACCCTGACTGTGACTGCTCTCTCTTGGGATTTACAGAGTAACTCAGTCTCAGTTACCTGTAACAGTCAGACTGATCCTGGAGGAATCATAGCAGGGACTGTGGTAGCAGTACTGATAGtcatcatcattatttgtaTCGGTATCTTTATATGGCGTCGCAAGCGAGAGCATCCCAGTATCCTAATTCCACCAGGATCCTCCTCCCAATCATCTAATAACAGAAATAAgCTAATTTCCCAGAAACAATTTCCAAAATACTTCAACACCATGAGTCGCGATGAGAACCATGGCTTCAAAGTGgaatatgagGGATTGAGAGCTGTGGGTACAGATCAGAGCTGTACAGCTGCTCTCCTCCCTGAGAACCAGAGCAAGAATAGATTCACCAATGTTCTGGCCTATGATTCATCTCGTGTAAAACTTCTACAAAATACTGCTGACTCGGACTATATCAATGCAAACTACATACCTGGATACGGCAGTGACAGCAGGCAGTACATAGCTGCTCAGGGTCCTCTGGCTTCTATGGTTGGTGATTTCTGGAGAATGGTGTGGGAACAGAAGTCTCAGGTCATTGTGATGCTGATTAACTGTACAGAAAGTGCGCGGGTAAAGTGTGAACAGTACTGGCCAGAGAACCGCAGTCCCTGTGCTTATGGTAACCTGATGATCAGTGTCCAATcagagcagaaaaagaaaagctggACTCTGCGAGAATTTAGTGTGAAAGATGGGACTGTCACTTCTGATGGCGGAAAAAGGCATCACTTCCAGTTCACAGCTTGGCCCCCAATTGGAGTTCCCTGTGGAACTGAGGAGCTGATGCAGTTCAGAGGGATTGTCCGGCAGCACATAGAGAGTTTCTCATCCACAGGACCTACAGTAGTGCACTGCAGTGCTGGAGTGGACAGGACTGGAGTTTTTATCGCTCTGGATACAGTACTGCAGCAacttgagaaagagaaagcagtcAGTGTAGCTGCCTGTGTACATCGCATGAGGCTCAGCCGACCCCTTATGGTGCAGACTGAGGATCAGTATGTGTTTGTGCACCAGTGCATCCTGGATTCTCTGCAGTCCAAACAGAATGGTACACCTGAGGTTGTATATGACAATCAGAACATAAATGATGCCCAAGATGAAAATGAATATTCCGATGTTCATGTAATTGAAGATAATGCAGATATCTATTTAATCCCAGATACTAATGAAAATCAAGAAATCTATGAAAGTCTATATGAAATATGCTAACGGCTCTGTACCTGCACTTGGAGACAATCATTAATTTGTCAGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668284.1 True 2519 mRNA 0.44 25 8904081 8921731

Neighbor

gene id symbol gene type direction distance location
LOC111191975 NA coding upstream 1827 8900225 ~ 8902254 (+)
LOC103030535 NA coding upstream 14686 8879585 ~ 8889395 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding upstream 35363 8844498 ~ 8868718 (+)
LOC103031465 NA coding upstream 61199 8834542 ~ 8842882 (+)
LOC103029568 ptrfb,LOC103029568,LOC108426559,LOC108256430,LOC107550021 coding upstream 92588 8782431 ~ 8811493 (+)
LOC103021367 NA coding downstream 10953 8932684 ~ 8974038 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding downstream 59273 8981004 ~ 9005830 (+)
bmp6 bmp6 coding downstream 87515 9009246 ~ 9068931 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 197673 9119404 ~ 9132136 (+)
LOC103030214 NA coding downstream 390059 9311790 ~ 9482091 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 26955 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 130318 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 154447 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 187284 8715728 ~ 8716797 (+)
G17417 NA non-coding upstream 214047 8668990 ~ 8690034 (+)
LOC111194870 NA non-coding downstream 6961 8928692 ~ 8931760 (+)
LOC111194882 NA non-coding downstream 151763 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 160357 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 281658 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 560671 9482402 ~ 9482708 (+)
LOC111191978 NA other upstream 77 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 4436 8891244 ~ 8899645 (+)
G17414 NA other upstream 187294 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 719244 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1474690 7422571 ~ 7429391 (+)
G17745 NA other downstream 1359493 10281224 ~ 10281976 (+)
G17904 abr other downstream 2256177 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 4045832 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 4123100 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 4174979 13096710 ~ 13128508 (+)

Expression


Co-expression Network