sycp2l


Basic Information

Item Value
gene id sycp2l
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10080591 ~ 10101407 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668293.1
ATCAGTCACACCAGCTTTCTTAGAACTGAACTACTCGAGCCACAAGTCGAGTAGGTTTTACAACCAACTTggctttaaatataattaaatataacgCCACAACGTGAAGAAATATAGAGAATCAGTCGTTTATGTGAACAGAAGGAAACAGTAGTATAGCTTGTGCAGTAGCTGGATAAATCACACGTGCTGCTAATGGGGAGCAGCTGGCTTGCAAGCAGGTTAGAGGAGGCGTTCACGAATAACAATGTCCTCTCGGCCGTTATGGTTCTTGTTGAGGAGAAATCTTCCACATCTCTGGTCGACCGGCTGGACGAAGTAGCGAGCAGGGAACtacataaaaatgaatttaaaaatgttactcTCATATTAAGGGCAATTGAACAAATAATCTCTAAAGATGGAGATTGTATTAACAGGCTTGTCCGCCAAGGTGTTGTCATAAAGATGCTAAATTGGTTCGAAAGGGTATCAGAACACCTGAAGATGCAGCCAAAGCCCCTCAAGGCCCCAATGCAGCTAATGGAAGGGTTCTACGAAGTGTCCATGagCCTTTGCCAGAGTGATATTGACGGCAACAGTAAGATTTTGGAGCTTCTCCTGTTGAGGTTTGGTGCTGTTGTGATTGACCAAGAAGTGAAATTCGGTCTACGTCTAGAGGCAATTAAGACCATTAACTCAATGTTGGACAGTGCTTCAAAAGAGTCTCGGAAAAAAATCTGCCAGTCTGATGATCACAACTTTCTActAGTGGAGTTTGCCAAGGTGATAGTAGATGTTGGTGATTATGAAATGCAGGTGGCCATATCTGAGGCGCTCTGCAGAATGACCCCAAAGAAACTGAGAGAGGAGCTGTCCGGCAAGTGGTTTAGCTACAGAAGCTTTGCGTCAACTTTCACAACAATAAGGGTGAAGGAGTTTGAAACGGATTGTAGAATATTTCTAAATGAACTCAACAGCTATTTTGGAGATTCAAGGAGAGTGTTTTCATTTCCATGCAGTAGGGCGTTTTTGGAGTTCACTGAGttGTTCAAACCTCAAGATGAGCTGCTGAAGGATTTCTGGGTGGACTTTAACCTGGGGACATCCTGCATCAGCTTCTTTGTGCATGACCCAGAAGGAACTCTGTGGGAACTTATTCATCTGCCTAAAGAAACCCTCAGCTCATACACTCTTCGAGAATGTGATGATCGGAAGCTCTTAAGTATTCACATGTCTCATCCAGTGTCTCATGGAAACATGATTGGGAAAATGGTCCAGATCGCCTTTGACTCGAAGTATGACATTCTGACTGCAGTAGAGAAGGTTTATGGTGGAAGAGAGAGTCAAAATTGCCAGAAGCTCCAAAGCAGGCTTCACCAGCAGAAGACACGGGAATTGCTGCTGAGAGTACGCAAAAATTCTCCAGTCCTCCTGTTACACAGACCACTGGGAAAACTCAGGTTTCCTTTTTGCTTCAGAGTGGACCAGGAAAACTGCCATCACCCACGAGCAGAAAAATCCAACTGGAAGAAACATTTAGAACCTGTAGCCCAGGTGACTGTGTCAGAAACTCTGAACCACACGTTTCTCACTGATGTGTCAGGGAGGTCACATGACAGGAAGCCATTCATGGCCGCTTTATGGAGGTACCAGGTGGTACGGGCTAAAACTGCTATATTCAGTCAGTCTTTCTCTTCTAATGGgtCTGTCAGCTCTGTTAAATCCCTTCCTTCGACTTCAAGAGAAATGAAATCTGTACAAAAGAGGAAAGGGAGGCCATTCCTCTCTGAGAGTGAGAGCCGTTCACCATTCAGCGAGAAACGCTCCTCCCAACAGACACCTCAATCTGACTACACCAGAAAGAAGCCCCGAGTAAAGAGCAGACTGaaagttCTGCCACTTTCTTCACCCAGCAGCAACGAGGACGAGTACAAGGAATCAACCCCCATGCGCAGATCTTTGGAAAGGGAGAGGGCTGAAAGTGCCTTGTGGCTTCAGAGCAAGCAAGGCAAAGCGAGGAAGAGTCAGGACATCTCTCGCACATCCAAAGGGATCACTGCGGATTCAGGCTTTCAAGAGAGAACTGTTTTAGATGACACTGTTTTCATAGAGGACCATGGTTTGTCTATAGAGcagcCTAAAATACATCAAGAGCCACATCCACCTccaaggaaaaaaacacaattatctacagAGTTGCAGGAGGGTCCTGGGGTGTCTGAGGCAAGACTAGTGAGCGAGGAGGAGTCACCATTCCTTACTTTCAAACCCAGAAGACTGTTCCCTCCTTCCACCCCATTGGAGACTGCTACTGAATCAATGGCCCAGACATTGTTGGAGGAGGAAGAATCTGAAACGGAGTTGGGCTCTGGAGTCACTGCTGCCTTTAACACCTTTAAGACTCAGCTAAGAGAACACTTCTCTtctaGGTATAAAAAGATTGAAGCGAAATCTATGCAATCTTTAACAGATTGCCAGAAGAACGTGACCTCTTTGCTCAGAACAGTTCACAATCAAAGGCTCGTCCATTTGGAACACTTCCATGACACTGTGGTGCAGCAGCTGGGAGAACTGGAGCAGAACTGTCTTTCCCTCAAAAACATTGAGAAGGAAACTGTGAGGTTCTGGCAGTCTGAGTCAGACACAGTCAAATCTTTCTGTGCTGAGCAGCAGAAGAGGTTGGATTCTTTAGAGATAATGAAAGAGAGTGTTCAAGAACAGGAGAGCCGAGCAAAGAGTTCTGAAGCAATGTCCTCAGGTGCTCACCCCTCCCACTCCACTGCAGCACCTGTCAGGGAAGAGACTGAAGAGAGCTGAAGAGGCCTAAGCACCGTTTCAGTTCCTACTCAAACATGTGCACACTTAAAACTGGCCTAAATCTTTTTTCCTACTGCACTTTTTTGCTATTACTTATAGGACCAGCTACGGggaaacataatataaataataactaaaataattgtCCTTTAATAAATTTGTGTATAAAGTTA

Function

NR:

description
synaptonemal complex protein 2-like isoform X1

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668293.1 True 2972 mRNA 0.45 35 10080591 10101407

Neighbor

gene id symbol gene type direction distance location
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 85551 9991406 ~ 9995040 (+)
LOC103024812 NA coding upstream 91073 9980606 ~ 9989518 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding upstream 126462 9937761 ~ 9954129 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 243963 9820961 ~ 9836628 (+)
LOC103030214 NA coding upstream 598500 9311790 ~ 9482091 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding downstream 42677 10144084 ~ 10227332 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding downstream 239087 10340494 ~ 10350048 (+)
LOC103044085 LOC105902693,LOC107570661 coding downstream 416014 10517421 ~ 10805698 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 1287517 11388924 ~ 11394347 (+)
spata22 NA coding downstream 1295480 11396887 ~ 11401496 (+)
G17709 NA non-coding upstream 71796 10007790 ~ 10008795 (+)
G17685 NA non-coding upstream 192213 9887866 ~ 9888378 (+)
G17679 NA non-coding upstream 234290 9846014 ~ 9846301 (+)
G17643 NA non-coding upstream 493719 9586658 ~ 9586872 (+)
G17637 NA non-coding upstream 517866 9562428 ~ 9562725 (+)
G17735 NA non-coding downstream 145177 10246584 ~ 10247321 (+)
G17739 NA non-coding downstream 157611 10259018 ~ 10259526 (+)
G17742 NA non-coding downstream 168114 10269521 ~ 10270290 (+)
G17751 NA non-coding downstream 208658 10310065 ~ 10330395 (+)
G17812 NA non-coding downstream 281290 10382697 ~ 10382969 (+)
G17443 NA other upstream 1130432 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1176587 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1180946 8891244 ~ 8899645 (+)
G17414 NA other upstream 1363804 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1895754 8168839 ~ 8184837 (+)
G17745 NA other downstream 179817 10281224 ~ 10281976 (+)
G17904 abr other downstream 1076501 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 2866156 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 2943424 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 2995303 13096710 ~ 13128508 (+)

Expression


Co-expression Network