LOC103027767 (gnal,LOC108426578,LOC106590334,LOC106579638)


Basic Information

Item Value
gene id LOC103027767
gene name gnal,LOC108426578,LOC106590334,LOC106579638
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10144084 ~ 10227332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668303.1
tctctcttctcctctctctctctctctctctctctatctgctcTGGCGACGGATAGACAGATAAGCGGCGCACGGATTGGTTTTTCTACGCCGCCGTTCCTGCGCTAGACTCCCCCGTGTTTCCAGGAGAATCCCCGctgcctctgtttttttttatttctggctCCGCGTTTGCGAGAGAACAGGGCGGAAAATGGGCTGTTTGGGCAACAGCAAGACCGAGGACCAGCGCATCGACGAGAAGGCTCAGCGAGAGGCCAACAAAAAGATAGAGAAGCAGCTCCAGAAGGAGAGGCAGGCGTACAAAGCCACACaccggctgctgctgctagGGGCTGGAGAATCCGGAAAGAGCACCATTGTCAAGCAGATGAGGATCTTGCACGTCAATGGCTTTAACGCAGAagaaaaaaagcagaaaatctTGGATATCCGAAAAAATGTGAAGGACGCCATCGTGACGATAGTATCGGCCATGAGCACCTTAATACCCCCAGTGCCGCTCGGCAACCCGGCCAACCAGTTCCGAGTCGACTACATAAAGAGTATAGCCCCGCTCTCAGACTTCGACTACACAGAGGTAAGGCGTCTCTTTCCTGTCATACtcagagaaaaaaagcagaaaatctTGGATATCCGAAAAAATGTGAAGGACGCCATCGTGACGATAGTATCGGCCATGAGCACCTTAATACCCCCAGTGCCGCTCGGCAACCCGGCCAACCAGTTCCGAGTCGACTACATAAAGAGTATAGCCCCGCTCTCAGACTTCGACTACACAGAGGAATTTTTTGAGCACGCCAAACATCTCTGGGATGATGAGGGAGTGAAGGCCTGCTTCGAACGCTCCAACGAGTACCAGCTCATTGACTGTGCACAATACTTCCTGGACAGAATCGACTCAGTACGACAGAACGACTACACACCAACAGACCAGGACTTGCTTAGGTGCCGAGTTTTGACTTCAGGGATTTTTGAAACGCGATTTCAAGTAGACAAAGTCAACTTTCAcaTGTTTGATGTGGGTGGTCAGAGAGATGAGAGGAGAAAGTGGATTCAGTGCTTTAATGATGTGACGGCCATCATCTTCGTGGCAGCCAGCAGCAGCTACAACATGGTGATCAGAGAAGATAACAGCACTAACCGCCTGCGCGAGTCCCTAGACCTGTTCCGCAGTATCTGGAATAACAGGTTTTTACGGACCATCTCGGTGATTCTCTTCCTGAACAAACAGGACATGCTGGCAGAGAAGATCCTTGCTGGCAAATCCAAACTTGAAGATTACTTCCCTGAGTACCTTCAGTACACAGTCCCGGCCGAAGCAACCGGTGACCCTGGAGAGGATGCGAGAGTGACCAGGGCCAAGTTCTTCATCCGGGATGAATTTCTGAGGATCAGCACAGCGAGTGGTTCGGACAAACACTACTGCTACCCGCACTTCACCTGCGCTGTGGACACGGAGAACATCCGTCGCGTCTTCAACGACTGTCGTGACATCATCCAGAGGATGCACCTCCGGCAGTACGAGCTCTTGTGATTGGCCGCCACCGGATCCGAACGCATCGGATCGCTTCTTTTCCACTCCCAGATCGCAGCGGGACTATGTGAACTACTGACAAGTGACAATGTTGTCatgagattttctttttttttttttctttttttttttttccctcctttgATGCTTTTTCCTCTCCTTACTTATAGCCTGTACTTCTGAGACGAGAGTGAGGTGCAcgagagagtgtgaaagtttgtatgcatgtgtgtgtgacagagagcgtgtgtatgtgtgcttgtgtgtaagtgtgattgtgtgtgtgtgtctgtgtgaagcACCTGAAGACGCTGTTcggattgctttttttttttgatcactCCAAGGTCATTCCTGTTTTCATTCTTTgactctttttgtttctttttttgttccagTTTCTCCGTCTTTTGAggactttttcttttactttctgcTAGCTGTGGTTGGACGTGGACCAGCTAACCTAACGGAAACCTGTGGTAACTTCAGGCACGTTAGTCTGAACGTTTGACCTCTCCTCCGCAAAGATTTGCGAGAaggttgtttcttttttttttcgtagaATACTTGACGTAGGGGGTGGACAATGCACTTTGCATCAGGTTCCTTAAAAAACAAGAAGGCCAGGAAGCATACTTCACTATGTAGCACCGCCATATTTATTACTCGCCACTTTTTTCCTCTTTAGtatgtaatttttgtttttgctttttttttgtttagttttttggaatgtgttttgctttgttcttattctgttttattttctgataaGAGTGCAGGGTTGTCGGGACAGCCGAGGGTGGGTAGGTTTTGGGGGTGGGTTGGGTTTGTTGGAATCGTCCAATGAGCACAGACTAGGCGTAAGAGTGGTGGCTTATGGGACTCGTCGTAGTCCTTTGCACCTCTTGGCCAATAGGCAGGCAGTAGTAGGCGCTTTTTTTCTGCCTAGAGAGAACCACCGCACTTGATTGGCCAACCTCTCTTAGAACAAGGGGGAAGGTGTCTTGATATGGTGGGCGCTAgtcctatataaatatatataaataaatacataatatattttttggggggtggggttgttttattattattattataattattattattatcctgaGGAGGAACGTGCAAGGTTTGCTTTATCTTGTACAGGCCTGcaaaatgtaatgttattttGTACAACTTCAttgaaaaagagacaaaaatgaaaaaaaaagacaaaaaaaaaaa

Function

symbol description
gnal Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and sensory perception of chemical stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in brain; gill; head; and peripheral olfactory organ. Human ortholog(s) of this gene implicated in dystonia 25. Orthologous to human GNAL (G protein subunit alpha L).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(olf) subunit alpha-like

GO:

id name namespace
GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0007608 sensory perception of smell biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668303.1 True 2773 mRNA 0.46 14 10144084 10227332

Neighbor

gene id symbol gene type direction distance location
sycp2l NA coding upstream 42677 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 149044 9991406 ~ 9995040 (+)
LOC103024812 NA coding upstream 154566 9980606 ~ 9989518 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding upstream 189955 9937761 ~ 9954129 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 307456 9820961 ~ 9836628 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding downstream 113162 10340494 ~ 10350048 (+)
LOC103044085 LOC105902693,LOC107570661 coding downstream 290089 10517421 ~ 10805698 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 1161592 11388924 ~ 11394347 (+)
spata22 NA coding downstream 1169555 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 1380858 11608190 ~ 11619687 (+)
G17709 NA non-coding upstream 135289 10007790 ~ 10008795 (+)
G17685 NA non-coding upstream 255706 9887866 ~ 9888378 (+)
G17679 NA non-coding upstream 297783 9846014 ~ 9846301 (+)
G17643 NA non-coding upstream 557212 9586658 ~ 9586872 (+)
G17637 NA non-coding upstream 581359 9562428 ~ 9562725 (+)
G17735 NA non-coding downstream 19252 10246584 ~ 10247321 (+)
G17739 NA non-coding downstream 31686 10259018 ~ 10259526 (+)
G17742 NA non-coding downstream 42189 10269521 ~ 10270290 (+)
G17751 NA non-coding downstream 82733 10310065 ~ 10330395 (+)
G17812 NA non-coding downstream 155365 10382697 ~ 10382969 (+)
G17443 NA other upstream 1193925 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1240080 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1244439 8891244 ~ 8899645 (+)
G17414 NA other upstream 1427297 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1959247 8168839 ~ 8184837 (+)
G17745 NA other downstream 53892 10281224 ~ 10281976 (+)
G17904 abr other downstream 950576 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 2740231 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 2817499 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 2869378 13096710 ~ 13128508 (+)

Expression


Co-expression Network