LOC103041619


Basic Information

Item Value
gene id LOC103041619
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30227545 ~ 30249748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668572.1
ATTCAGTCCACTTCTGTGGAGAGCCCTGAAGTTTCTGATTCCCCTGTTATTCCCACTGAGTATTCTGATTTTTTAGAAGTATTTAGCAAAGATAACGCTACTAAGTTGCCTCCTCATCGCCCCTGTGACTGTGCTATCGATCTAGTGGAGGGTGCCACTTTACCCAAAGCTAGGGTGTACCCCCTTACTCTCGATGAGGAGAAGGCTATGGCAGACTACGTCTCTGAGGCTTTAGCTCAGGGTTTCATTCGCCCGTCTAAGTCTCCTGTCGGTTCGGGTTTCttctttgtgaagaaaaagGACGGGGGACTGAGACCCTGTATAGATTACCGAGGTTTGAACGCTATTACTAAGAAGTTTGCGTACCCTTTGCCCCTCATTCCATGCGCTCTTGAGCAGTTGCGTAACGCCACCTATTTCACTAAGCTCGATTTACGTAGTGCTTACAATTTGATCCGCATTAGGGAGGGGGACGAGTGGAAAACCGCGTTTACTGCTACCAATGGCCACTATGAGTACTTAGTGATGAGTTATGGTCTTGCTAACGCCCCCGCTGTGTTTCAGTCGTTTATGAATGACCTTTTTCATGACATGATTGGCAAATATGTTACCCTATTTATAGACAACATATTAATTTATTCGTCTGACCTTAAGTCTCACGTGCTACATGTTCGCTCGGTTCTCCAACGACTATTGGAGAACAACCTctatgctaaagccgagaaatgcgagttccaccttcagagagtcgcatttctcggctatgttatcagctcccagggagttctTATGGATGACTCCAAAGTAGATGCCGTTACTAGCTGGCCCGTTCCCCAATCTATTAAAGACTTACAATGTTGCTTAGGATTTGCAAATTTCTATAGACGTTTTATACGTAATTTCAGCAGTATAGCTGCTCCGCTCACTGCGCTCACTATGAACGCCACCAAGGTCCTTAAGTGGTCCCCTGAAGCTGACTTAGCGTTCCACCAgttaaaaactgcttttgttTCTGCCCCCATCCTCATGCACCCCAAACCTGAACTACCATTTGTAGTCGAGGTCGACGCTTCAGATACTAGCGTGGGAGCAGTTCTCTCCCAGCGCAGCGGTTCACCGCCTAAACTCCATCCCATAGCCTTCTTCTCGCGTAAAATGTCACCAGCTGAGCGTaactatgggataggggatagggAATTACTGGCTGTCAAACTTTCTCTTGAGgaatggcgtcactggctggaagCAATGGGCAATGTGAAAGGGTCAATCAAGAATTGGtgcattctgggttaccaGCCTCCGTTGGCTCCGTGGACAGCGTCGTCCACTGAGATACCTGCTGTtgacgactggatgaagcggagtgagcagACCATTGGTGGGTTTCTGCAGGCGCTCAGTGAGATGGGCTTCAGTCAGGAGCAAATTCAGGATGCCATGCAAGCTGGCTGTTTTACTGTTACAGAGGCTGCAGAATGGCTGCTACAGGGTGGAGGCCCGCACCACAGGTTAAGGAACCAGACAGGGTCACCTACAAATGCCTTCTCTGCTTTTAACCCTCCAAAAAGCACCACCCCGAGCCCGTCAGAGCAAACAGGTTCTTCTCTGGTCCTGAATCCCACTGTCCTGAGCCCGCCTGCTCAGAGTCCTGCTGAAGAGCTGCAGCCGTTAGAGTCTAGAATAAAGCAGGACAAGAGCAGCTTCcatcagcagcagagagagaaagcagctCAGGAGGCTCAGCATGAGAGAAGGCaaaaaaaacagGAGCGTGAGTTGGTTCTGAAGAGGATTGCAGAGGATCGGCGCTTGCAGCAGGAGAAGGCCAGTGTTCCCTCGGCCAGTAGCCAGGGCAACACCCTGGGTGGGCAACGTCAGACCAGTGTGGATAATCAGTGCACTCTTATGATCCGGCTGCCCTCTGGTGAATCAATGCGCGAGTGTTTCCCCGCTGATGCTCTGCTTTGCAGTGTTGTTGAACACATCGCTGCTCGCCATCCTTCTCTTCCAGCGTTTACACTGCTGCAGGGATTTCCTCGCAAGCGTTTCTCAGAGGCAGAGCTGACACTGTCCCTGCGCTTTCTTGAGCCAGTTGAACACATTGAACCTCCACAACTGCAGGCAGAGGCAGAGTTGGAGCAGCTTGTATTGCCCCGCCCATTTCCACACCAGTTCTGGGAAGAAGCTGTAGAGCATGTTGGGATTGGACCTTCAGGACCTTCCCATTTCTGGGGGCGTGGTCAGCGTTTGGTGTCTGGTGAAGCTGGTGATGAACACTCGGATGGTGAGGAGCAGCCTGAAGAACCAGCAGTGCCACTTCTAAATGGTTTACCCCAGCTGCCGATCAGAGTCGGACCTATGTTGGAGCCACAGCATCTCTGGCCTCAACAGGGCAACAGACTAAGAGAACCTGTTCTTGATGCAGCTGCTGATCCTGCCGCAGGAAGGATGTTGCCGGGAGATGCTGCAGTCCAGCGACTACAGAGACCAGTTCAGCATGAAGAACCTTCACCCCCGAAAAAACCATTCAGGACCCCCAGTGTCCCCTCACTCTGTTCTCTTGCCACCAAAGCAAGCATCTCCCTCATTACAGCTCCCTGTATGCAGTACAGTAGCAGTCTTGCTGGTTTGACCCCAGAGTTGGCAGAGCTGTTGTTAGGTCACATGACCTCTGGCCGTGTGCTGAAGCCACGGACCCTGGAGTTGTTTTTTGGCTGCCCGCTGCGGAGCTTTATCCTGAACAGTTACCCGTACACCACCAATGAATTACTACGGCAACTGCGAGCCTTCACTGCACTAAAACATCTCAGTCTGGTTAACTCTCCACTTATAacagATTCTGGACTTTCTGTTTTGTCCAGCCTGTTAAAACTGCAGCACTTGAACCTTTCATCCTGCAGTAAACTCACTGACTCCTGTTTGAAGCCCATCACTAAACTACAGTGTTTGTCTTTTCTGGCCCTGAATAAGACTAAAGTAAGCGATGCTGGAATGCTAATGTATCTGAAGTCTGCACCCTCTACTCTTACCCAACTCTGTTTGAATGAGACGGCCATTACTGAGGCTACACTGAGCGAGCTGCCAAAGTGTGTACCACAACTGCGTCTGCTTAGCATTGCACGCACTCAGGTAAATGACGTGTCTGCattggctgaactgcactgcTTGCAGACACTTCACCTGGACAGTACAGGTGTAAAGGAAGACTCCCTTCAGGCCCTTAAAGCCCATCCCAGCTTATCTGCTCTAAGTCTCTCTGGGATTCCTGTCACCAATGGTAACCATATGCTGGAGATCATATCTGGTTTAAGACTGACCCAGCTAACACTACCTGGCCGTCACTCGCTGACTGATGCTGGACTTCTTTACCTCTCCAGACAGATTCTGCTCTCTGAGGTTGACCTAACTGACTACACACAGATCACAGACCAGGGCATTACTCAGCTTGGCTCCATGACCCGGCTCAAGAAGCTGTCTCTCAGTAACACTCAGTTAAGTGATGCGGGACTTATTGCACTGGTAACTCTAAAGGAGTTAGTGGAGCTGTGCCTGGATCGAACAGCTGTCAGCAGTCGGAGTGTGGCTGCCCTCATTACACAGTTGCCGTATTTGCAGGTAATAGGCTTGGCCTGTACACGGGTGGGTGATACAGTGGTCAGATATGGTTTATCTCAGTGCCCCCAACTCCTTAAACTTAACCTCAGCAGGACACGCATTACGGACCGTGGCTTAAGGTTTCTTTACCGAATGAGACTGAACCAGGTGAATCTGGATGGCACAGGTGTGACTCTGGAGGGGGTGGCCAATCTGATTTCTGCCTGTCCTCACCTAACCAGCGTCCGAGCCAGCAACATCCGCAGCATCCCCCTCGATCAGCAGTCTGATAATGACGATGATCATCTGCTGCCCTGAACTGCACACTTCTCTTTCTCAtgtatatgcacacacacaatgacTATTTTTGATGTTTGTTAAGTCTAATGTCTACAGTACAGCTGTGAGTTCTCTCATTGCTGAGAAGTCTGATTCTAGGTGAGCAAGATTTACTGAAATTTGAGCAAGTAAAGACAGTAGTGGTGTTTTGGTGGTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668572.1 True 4095 mRNA 0.50 20 30227545 30249748

Neighbor

gene id symbol gene type direction distance location
LOC103043161 NA coding upstream 47738 30174820 ~ 30179807 (+)
LOC103039153 LOC108426583 coding upstream 65718 30145146 ~ 30161827 (+)
dcaf11 dcaf11,LOC107691410 coding upstream 84382 30131539 ~ 30143163 (+)
ngdn NA coding upstream 98220 30124804 ~ 30129325 (+)
prdm14 prdm14,LOC107683184,LOC104959664 coding upstream 134801 30084377 ~ 30092744 (+)
LOC103028785 LOC103028785,LOC108412595,LOC105899448,LOC107695994,LOC107582101 coding downstream 33893 30283641 ~ 30295918 (+)
LOC103040669 LOC108411512,LOC102303064,LOC101467994 coding downstream 125827 30375575 ~ 30393774 (+)
ylpm1 ylpm1,LOC108411503,LOC107729078,LOC107685771 coding downstream 164367 30414115 ~ 30433290 (+)
LOC103026930 LOC103026930,LOC108411508,LOC105017614,LOC107714796,LOC107670243,LOC107565462,LOC107550532,LOC107676708 coding downstream 200354 30450102 ~ 30480340 (+)
LOC103029213 NA coding downstream 822399 31072147 ~ 31076057 (+)
G22456 NA non-coding upstream 222051 30000115 ~ 30005494 (+)
G22445 NA non-coding upstream 363480 29862505 ~ 29864065 (+)
G22430 NA non-coding upstream 638275 29589046 ~ 29589270 (+)
G22424 NA non-coding upstream 659175 29567663 ~ 29568370 (+)
LOC111195772 NA non-coding upstream 1029887 29196469 ~ 29197658 (+)
G22556 NA non-coding downstream 14622 30264370 ~ 30264646 (+)
G22558 NA non-coding downstream 15277 30265025 ~ 30265290 (+)
G22576 NA non-coding downstream 54547 30304295 ~ 30304616 (+)
G22614 NA non-coding downstream 190757 30440505 ~ 30446957 (+)
LOC111195805 NA non-coding downstream 266447 30516195 ~ 30519886 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1045414 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1059632 29152052 ~ 29167913 (+)
G22276 NA other upstream 1238714 28988568 ~ 28988831 (+)
LOC111192074 LOC108249465 other upstream 1579357 28645061 ~ 28648188 (+)
mtrr mtrr other upstream 2653143 27520234 ~ 27574402 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other downstream 9560 30259308 ~ 30263850 (+)
LOC103026436 LOC108411506,LOC103368653 other downstream 199616 30449364 ~ 30512826 (+)
G22834 NA other downstream 1244597 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 2572596 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 2587304 32837052 ~ 32841346 (+)

Expression


Co-expression Network